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https://github.com/brain-to/pymoco_v2

Code for 3D Retrospective Motion Correction using Neural Network-assisted Joint Estimation (updated March 2025)

https://github.com/brain-to/pymoco_v2

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ○
    Academic publication links
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (1.9%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Code for 3D Retrospective Motion Correction using Neural Network-assisted Joint Estimation (updated March 2025)

Basic Info
  • Host: GitHub
  • Owner: BRAIN-TO
  • Language: Python
  • Default Branch: main
  • Size: 42.1 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme

README.md

Joint Motion and Image Estimation

A Python package for retrospective motion correction (RMC) of head MRI.
RMC is carried out through multicoil data consistency-driven joint motion and image estimation.
This work references Haskell et al (https://doi.org/10.1002/mrm.27771) and Cordero-Grande et al (https://doi.org/10.1002/mrm.26796).

Owner

  • Name: Brain Research in Advanced Imaging and Neuromodeling - Toronto
  • Login: BRAIN-TO
  • Kind: organization

GitHub Events

Total
  • Push event: 29
  • Public event: 1
  • Create event: 1
Last Year
  • Push event: 29
  • Public event: 1
  • Create event: 1

Dependencies

environment.yml conda
  • _libgcc_mutex 0.1
  • _tflow_select 2.1.0
  • absl-py 0.15.0
  • aiohttp 3.8.1
  • aiosignal 1.2.0
  • astor 0.8.1
  • astunparse 1.6.3
  • async-timeout 4.0.1
  • attrs 21.4.0
  • blas 1.0
  • blinker 1.4
  • brotlipy 0.7.0
  • c-ares 1.18.1
  • ca-certificates 2022.07.19
  • certifi 2022.9.24
  • cffi 1.15.0
  • click 8.0.4
  • cryptography 3.4.8
  • cudatoolkit 10.1.243
  • cudnn 7.6.5
  • cupti 10.1.168
  • dataclasses 0.8
  • frozenlist 1.2.0
  • gast 0.4.0
  • google-pasta 0.2.0
  • hdf5 1.10.6
  • idna 3.3
  • importlib-metadata 4.11.3
  • intel-openmp 2021.4.0
  • keras-preprocessing 1.1.2
  • ld_impl_linux-64 2.35.1
  • libffi 3.3
  • libgcc-ng 9.1.0
  • libgfortran-ng 7.5.0
  • libgfortran4 7.5.0
  • libprotobuf 3.19.1
  • libstdcxx-ng 9.1.0
  • mkl 2021.4.0
  • mkl-service 2.4.0
  • mkl_fft 1.3.1
  • mkl_random 1.2.2
  • multidict 5.2.0
  • ncurses 6.3
  • oauthlib 3.2.0
  • openssl 1.1.1q
  • opt_einsum 3.3.0
  • pyasn1 0.4.8
  • pycparser 2.21
  • pyjwt 2.1.0
  • pyopenssl 21.0.0
  • pysocks 1.7.1
  • python 3.9.7
  • readline 8.1.2
  • requests 2.27.1
  • setuptools 58.0.4
  • sqlite 3.37.0
  • tensorflow-base 2.4.1
  • tensorflow-estimator 2.6.0
  • tk 8.6.11
  • tzdata 2021e
  • urllib3 1.26.9
  • wheel 0.37.1
  • xz 5.2.5
  • yarl 1.6.3
  • zlib 1.2.11