https://github.com/braingeneers/braindance
Making neural stimulation easier
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.7%) to scientific vocabulary
Repository
Making neural stimulation easier
Basic Info
- Host: GitHub
- Owner: braingeneers
- License: gpl-3.0
- Language: Python
- Default Branch: main
- Homepage: https://braingeneers.github.io/braindance
- Size: 67.9 MB
Statistics
- Stars: 5
- Watchers: 8
- Forks: 2
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
BrainDance
Making neural stimulation easier.
Please check out our wiki here!
Easy installation
We recommend using conda for setting up dependencies.
bash
conda create -n brain python=3.11
conda activate brain
Install only BrainDance:
bash
pip install git+https://github.com/braingeneers/braindance
Install BrainDance and RT-Sort
pip install git+https://github.com/braingeneers/braindance#egg=braindance[rt-sort]
Additionally, install PyTorch with any version of CUDA as the compute platform.
If running on a Linux machine, install Torch-TensorRT as well for faster RT-Sort computation speed.
Kilosort2 integration
To use Kilosort2 within BrainDance, see the public Kilosort2 GitHub repository for installation
Open Ephys
If you want to read data in real time from an Open Ephys GUI, install the Open Ephys GUI and Falcon Output plugin.
In your Python environment, install the Open Ephys Python package.
bash
pip install open-ephys-python-tools
Owner
- Name: braingeneers
- Login: braingeneers
- Kind: organization
- Repositories: 15
- Profile: https://github.com/braingeneers
GitHub Events
Total
- Issues event: 3
- Watch event: 7
- Issue comment event: 4
- Push event: 10
- Pull request event: 2
- Fork event: 1
Last Year
- Issues event: 3
- Watch event: 7
- Issue comment event: 4
- Push event: 10
- Pull request event: 2
- Fork event: 1
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 2
- Total pull requests: 1
- Average time to close issues: 1 day
- Average time to close pull requests: N/A
- Total issue authors: 2
- Total pull request authors: 1
- Average comments per issue: 1.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 1
- Average time to close issues: 1 day
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 1.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- alejoe91 (1)
- chrishalcrow (1)
Pull Request Authors
- nathanhwu (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- gym *
- gymnasium *
- h5py *
- matplotlib *
- numba *
- numpy *
- pandas *
- psutil *
- pyqt5 *
- scipy *
- seaborn *
- smart_open *
- tables *
- tqdm *
- zmq *