https://github.com/brainglobe/napari-brainreg-standard
Visualise brainreg registration output in standard space
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 1 committers (100.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.9%) to scientific vocabulary
Keywords
Repository
Visualise brainreg registration output in standard space
Basic Info
Statistics
- Stars: 7
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
napari-brainreg-standard
This plugin is now archived, all the functionality is available within napari-brainreg.
Visualise brainreg registration output in napari in standard space.
This is the companion plugin to napari-brainreg which loads the data in sample space.
Based on the napari cookiecutter plugin template and napari-ndtiffs by @tlambert03
Installation
Assuming you already have napari installed, you can install napari-brainreg-standard via pip:
pip install napari-brainreg-standard
Usage
Open napari and drag your brainreg output directory (the one with the log file) onto the napari window.
Various images should then open, including:
* Image (downsampled) - the image used for registration
* atlas_name - overlay of the atlas annoations
If you downsampled additional channels, these will also be loaded.
Owner
- Name: BrainGlobe
- Login: brainglobe
- Kind: organization
- Location: London/Munich
- Website: https://brainglobe.info/
- Twitter: brain_globe
- Repositories: 28
- Profile: https://github.com/brainglobe
Open python tools for morphological analyses in systems neuroscience
GitHub Events
Total
Last Year
Committers
Last synced: about 3 years ago
All Time
- Total Commits: 5
- Total Committers: 1
- Avg Commits per committer: 5.0
- Development Distribution Score (DDS): 0.0
Top Committers
| Name | Commits | |
|---|---|---|
| Adam Tyson | a****n@u****k | 5 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 9 months ago
All Time
- Total issues: 0
- Total pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- adamltyson (1)