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PopMedNet

PopMedNet: A scalable and extensible open-source informatics platform designed to facilitate the implementation and operation of distributed health data networks - Published in JOSS (2022)

https://github.com/popmednet-team/popmednet

Science Score: 59.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: joss.theoj.org
  • ✓
    Committers with academic emails
    1 of 8 committers (12.5%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.8%) to scientific vocabulary

Scientific Fields

Engineering Computer Science - 32% confidence
Last synced: 6 months ago · JSON representation

Repository

This is the repository for the open source code of the distributed data network platform PopMedNet

Basic Info
  • Host: GitHub
  • Owner: PopMedNet-Team
  • License: other
  • Language: CSS
  • Default Branch: master
  • Homepage: https://www.popmednet.org/
  • Size: 480 MB
Statistics
  • Stars: 12
  • Watchers: 7
  • Forks: 9
  • Open Issues: 19
  • Releases: 29
Created over 8 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

Unmaintained Project

Please note that this project is no longer maintained.

PopMedNet™

DOI

PopMedNet™ is an open-source application used to facilitate multi-site health data networks. It uses a distributed network design that enables data holders to retain full control of their data. Investigators send questions to data holders for review and response. PopMedNet eliminates the need for assembling patient records in a centralized repository, thus preserving patient privacy and confidentiality.

Statement of need

Distributed health network plays an important role in supporting a number of population health activities.

The goal of PopMedNet™ is to facilitate distributed analysis of electronic health data in order to support medical product safety surveillance, disease surveilance, comparative effectiveness, quality, medical resource use, cost-effectiveness, and related studies. It does this by enabling the creation of health data networks that allows the data owners to keep and control uses of their data, while at the same time allows customized access and governance for each network.

The concerns of the network stakeholders are addressed in the design and governance models of the PopMedNet™ software platform.

PopMedNet™ features include distributed querying, customizable workflows, and auditing and search capabilities. Its flexible role-based access control system enables the enforcement of varying governance policies.

Software Paper

An overview of PopMedNet™ can be found in the accompanying software paper. DOI

Core functionality

For a description of the core functionality, see the section "How does PopMedNet™ work?" in the accompanying software paper.

Owner

  • Name: PopMedNet
  • Login: PopMedNet-Team
  • Kind: user
  • Location: Boston, MA

GitHub Events

Total
  • Push event: 2
Last Year
  • Push event: 2

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 55
  • Total Committers: 8
  • Avg Commits per committer: 6.875
  • Development Distribution Score (DDS): 0.782
Past Year
  • Commits: 11
  • Committers: 2
  • Avg Commits per committer: 5.5
  • Development Distribution Score (DDS): 0.182
Top Committers
Name Email Commits
PopMedNet-Team s****t@p****g 12
Jeffrey Ladd j****d@g****m 11
Daniel Dee d****e@g****m 10
Jeffrey Ladd j****d@j****t 9
ddeehere d****l@a****m 6
Daniel S. Katz d****z@i****g 5
Tyler Jette t****e@h****g 1
EHEALTH\apaczusk A****i@h****g 1
Committer Domains (Top 20 + Academic)
harvardpilgrim.org: 2 gdit.com: 2 ieee.org: 1 avacoda.com: 1 jeffreyladd.net: 1 popmednet.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 6
  • Total pull requests: 54
  • Average time to close issues: 6 days
  • Average time to close pull requests: 9 months
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.57
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 49
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • lrasmus (5)
  • jhancock4d (1)
Pull Request Authors
  • dependabot[bot] (49)
  • danielskatz (5)
Top Labels
Issue Labels
Pull Request Labels
dependencies (49) .NET (9) javascript (7)

Dependencies

.nuget/packages.config nuget
  • MSBuild.Extension.Pack 1.5.0
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
Lpp.Adapters/Lpp.Dns.DataMart.Client/packages.config nuget
  • Common.Logging 3.4.1
  • Common.Logging.Core 3.4.1
  • DocumentFormat.OpenXml 2.14.0
  • Ix-Main 1.2.5
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.Build 1.0.21
  • Microsoft.CSharp 4.7.0
  • Microsoft.Net.Http 2.2.29
  • MouseKeyHook 5.6.0
  • Newtonsoft.Json 13.0.1
  • RestSharp 106.13.0
  • Rx-Core 2.2.5
  • Rx-Interfaces 2.2.5
  • Rx-Linq 2.2.5
  • Rx-Main 2.2.5
  • Rx-PlatformServices 2.2.5
  • Rx-WinForms 2.2.5
  • SSH.NET 2020.0.1
  • SharpZipLib 1.3.3
  • System.IO.FileSystem.Primitives 4.3.0
  • System.IO.Packaging 5.0.0
  • WinForm.Inspector.Tool 1.0.0.9
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Client.Database/packages.config nuget
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.Bcl.Build 1.0.21
  • Npgsql 5.0.10
  • Oracle.ManagedDataAccess 21.4.0
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Client.DomainManger/packages.config nuget
  • EntityFramework 6.4.4
  • SharpZipLib 1.3.3
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Client.Tests/packages.config nuget
  • Ix-Main 1.2.5
  • MSTest.TestAdapter 2.2.7
  • MSTest.TestFramework 2.2.7
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.Build 1.0.21
  • Newtonsoft.Json 13.0.1
  • Rx-Core 2.2.5
  • Rx-Interfaces 2.2.5
  • Rx-Linq 2.2.5
  • Rx-Main 2.2.5
  • Rx-PlatformServices 2.2.5
  • Rx-WinForms 2.2.5
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.DataChecker/packages.config nuget
  • MSBuild.Extension.Pack 1.9.1
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.Build 1.0.21
  • Newtonsoft.Json 13.0.1
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.ESPQueryBuilder/packages.config nuget
  • Common.Logging 3.4.1
  • Common.Logging.Core 3.4.1
  • EntityFramework 6.4.4
  • MSBuild.Extension.Pack 1.9.1
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.CSharp 4.7.0
  • Newtonsoft.Json 13.0.1
  • Npgsql 5.0.10
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.ESPQueryBuilder.Conditions/packages.config nuget
  • Common.Logging 3.4.1
  • Common.Logging.Core 3.4.1
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • MSBuild.Extension.Pack 1.9.1
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.Bcl.Build 1.0.21
  • Microsoft.CSharp 4.7.0
  • Npgsql 5.0.10
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.ESPQueryBuilder.Data/packages.config nuget
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.Bcl.Build 1.0.21
  • Npgsql 5.0.10
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
Lpp.Adapters/Lpp.Dns.DataMart.Model.ESPQueryBuilder.I2B2/packages.config nuget
  • Common.Logging 3.4.1
  • Common.Logging.Core 3.4.1
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • MSBuild.Extension.Pack 1.9.1
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.CSharp 4.7.0
  • Npgsql 5.0.10
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.Interface/packages.config nuget
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.Metadata/packages.config nuget
  • MSBuild.Extension.Pack 1.9.1
  • Newtonsoft.Json 13.0.1
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.PCORIQueryBuilder.Data/packages.config nuget
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.Bcl.Build 1.0.21
  • Npgsql 5.0.10
  • Oracle.ManagedDataAccess 21.4.0
  • Oracle.ManagedDataAccess.EntityFramework 21.4.0
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
Lpp.Adapters/Lpp.Dns.DataMart.Model.Processors/packages.config nuget
  • MSBuild.Extension.Pack 1.9.1
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.Processors.Tests/packages.config nuget
  • EntityFramework 6.4.0
  • EntityFramework6.Npgsql 6.4.1
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.AsyncInterfaces 1.1.0
  • Microsoft.Bcl.Build 1.0.21
  • Newtonsoft.Json 12.0.3
  • Npgsql 4.1.3.1
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 4.7.1
  • System.Text.Encodings.Web 4.7.0
  • System.Text.Json 4.7.1
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.8
Lpp.Adapters/Lpp.Dns.DataMart.Model.QueryComposer/packages.config nuget
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • Google.Protobuf 3.19.1
  • LinqKit 1.1.26
  • MSBuild.Extension.Pack 1.9.1
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.Bcl.Build 1.0.21
  • Newtonsoft.Json 13.0.1
  • Npgsql 5.0.10
  • Oracle.ManagedDataAccess 21.4.0
  • Oracle.ManagedDataAccess.EntityFramework 21.4.0
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.QueryComposer.Tests/packages.config nuget
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • Google.Protobuf 3.19.1
  • LinqKit 1.1.26
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Microsoft.Bcl.Build 1.0.21
  • Newtonsoft.Json 13.0.1
  • Npgsql 5.0.10
  • Oracle.ManagedDataAccess 21.4.0
  • Oracle.ManagedDataAccess.EntityFramework 21.4.0
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/Lpp.Dns.DataMart.Model.Sample/packages.config nuget
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • MSBuild.Extension.Pack 1.9.1
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Npgsql 5.0.10
  • System.Buffers 4.5.1
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/PopMedNet.Adapters.AcceptanceTests/packages.config nuget
  • EntityFramework 6.4.4
  • EntityFramework6.Npgsql 6.4.3
  • MSTest.TestAdapter 2.2.7
  • MSTest.TestFramework 2.2.7
  • Microsoft.Bcl.AsyncInterfaces 5.0.0
  • Newtonsoft.Json 13.0.1
  • Npgsql 5.0.10
  • Oracle.ManagedDataAccess 21.4.0
  • Oracle.ManagedDataAccess.EntityFramework 21.4.0
  • System.Buffers 4.5.1
  • System.Configuration.ConfigurationManager 5.0.0
  • System.Memory 4.5.4
  • System.Numerics.Vectors 4.5.0
  • System.Runtime.CompilerServices.Unsafe 5.0.0
  • System.Security.AccessControl 5.0.0
  • System.Security.Permissions 5.0.0
  • System.Security.Principal.Windows 5.0.0
  • System.Text.Encodings.Web 5.0.1
  • System.Text.Json 5.0.2
  • System.Threading.Channels 5.0.0
  • System.Threading.Tasks.Extensions 4.5.4
  • System.ValueTuple 4.5.0
  • log4net 2.0.13
Lpp.Adapters/PopMedNet.CDM.Population/PopMedNet.CDM.Population/PopMedNet.CDM.Population.csproj nuget
  • Microsoft.Extensions.Hosting 5.0.0
  • Npgsql 5.0.5
  • Oracle.ManagedDataAccess.Core 3.21.1
  • Serilog 2.10.0
  • Serilog.AspNetCore 4.1.0
  • Serilog.Extensions.Logging 3.0.1
  • Serilog.Settings.Configuration 3.1.0
  • Serilog.Sinks.Console 3.1.1
  • System.Data.SqlClient 4.8.2
Lpp.Dns.Api/packages.config nuget
  • Microsoft.TypeScript.MSBuild 4.6.3 development
  • Antlr 3.5.0.2
  • BouncyCastle 1.8.9
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Lpp.Dns.Api.Tests/packages.config nuget
  • DocumentFormat.OpenXml 2.14.0
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  • Microsoft.Bcl 1.1.10
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Lpp.Dns.ApiClient/packages.config nuget
  • HttpClient.Compression 1.1.0
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Lpp.Dns.DTO/packages.config nuget
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
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Lpp.Dns.DTO.DataMartClient/packages.config nuget
  • Microsoft.Bcl 1.1.10
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Lpp.Dns.Data/packages.config nuget
  • EntityFramework 6.4.4
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Lpp.Dns.DocumentVisualizers/packages.config nuget
  • EntityFramework 6.4.4
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  • Microsoft.Bcl.Build 1.0.21
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Lpp.Dns.HealthCare.Helper.Tests/packages.config nuget
  • Common.Logging 3.4.1
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  • Microsoft.Net.Http 2.2.29
  • Microsoft.Web.Infrastructure 1.0.0.0
Lpp.Dns.HealthCare.Helpers/packages.config nuget
  • Common.Logging 3.4.1
  • Common.Logging.Core 3.4.1
  • DocumentFormat.OpenXml 2.14.0
  • EntityFramework 6.4.4
  • Microsoft.AspNet.Mvc 5.2.7
  • Microsoft.AspNet.Razor 3.2.7
  • Microsoft.AspNet.WebApi.Client 5.2.7
  • Microsoft.AspNet.WebApi.Core 5.2.7
  • Microsoft.AspNet.WebApi.WebHost 5.2.7
  • Microsoft.AspNet.WebPages 3.2.7
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.Build 1.0.21
  • Microsoft.CSharp 4.7.0
  • Microsoft.Net.Http 2.2.29
  • Microsoft.Web.Infrastructure 1.0.0.0
  • Newtonsoft.Json 13.0.1
  • SharpZipLib 1.3.3
  • System.IO.FileSystem.Primitives 4.3.0
  • System.IO.Packaging 5.0.0
Lpp.Dns.LocalDataMart/packages.config nuget
  • Ix-Main 1.2.5
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.Build 1.0.21
  • Microsoft.Net.Http 2.2.29
  • Rx-Core 2.2.5
  • Rx-Interfaces 2.2.5
  • Rx-Linq 2.2.5
  • Rx-Main 2.2.5
  • Rx-PlatformServices 2.2.5
Lpp.Dns.Mvc.Interfaces/packages.config nuget
  • Microsoft.AspNet.Mvc 5.2.7
  • Microsoft.AspNet.Razor 3.2.7
  • Microsoft.AspNet.WebPages 3.2.7
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.Build 1.0.21
  • Microsoft.Net.Http 2.2.29
  • Microsoft.Web.Infrastructure 1.0.0.0
  • Rx-Core 2.2.5
  • Rx-Interfaces 2.2.5
  • Rx-Linq 2.2.5
  • Rx-Main 2.2.5
  • Rx-PlatformServices 2.2.5
Lpp.Dns.Portal.Interfaces/packages.config nuget
  • Ix-Main 1.2.5
  • Microsoft.AspNet.Mvc 5.2.7
  • Microsoft.AspNet.Razor 3.2.7
  • Microsoft.AspNet.WebPages 3.2.7
  • Microsoft.Bcl 1.1.10
  • Microsoft.Bcl.Async 1.0.168
  • Microsoft.Bcl.Build 1.0.21
  • Microsoft.Net.Http 2.2.29
  • Microsoft.Web.Infrastructure 1.0.0.0