Releases | Open Source Science

What's Changed

Allow 'frames pattern' to list only the indices of the frames to exclude by @carnisj in https://github.com/carnisj/bcdi/pull/331
Facet by @DSimonne in https://github.com/carnisj/bcdi/pull/332
Clean unit tests by @carnisj in https://github.com/carnisj/bcdi/pull/333
update dependencies - doit by @carnisj in https://github.com/carnisj/bcdi/pull/334

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.3.0...v0.3.1

- Python
Published by carnisj over 3 years ago

What's Changed

fix postprocessing for energy scans by @carnisj in https://github.com/carnisj/bcdi/pull/326
[Bug] Take into account the region of interest in bcdi_utils.find_bragg by @carnisj in https://github.com/carnisj/bcdi/pull/327
prepare for version 0.3.0 by @carnisj in https://github.com/carnisj/bcdi/pull/328

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.9...v0.3.0

- Python
Published by carnisj over 3 years ago

What's Changed

Refactor postprocessingutils.finddatarange by @carnisj in https://github.com/carnisj/bcdi/pull/297
Implement PeakFinder for the calculation of corrected detector angles by @carnisj in https://github.com/carnisj/bcdi/pull/298
remove deprecated fix_size parameter by @carnisj in https://github.com/carnisj/bcdi/pull/299
Refactor postprocessing with more OOP by @carnisj in https://github.com/carnisj/bcdi/pull/306
fix typo error in logger usage by @clatlan in https://github.com/carnisj/bcdi/pull/309
change the name of the field name for the phase in the .vti output by @clatlan in https://github.com/carnisj/bcdi/pull/310
Bug: force centering by center of mass after interpolation by @carnisj in https://github.com/carnisj/bcdi/pull/312
Add support for BM02 beamline by @carnisj in https://github.com/carnisj/bcdi/pull/311
Add more OOP in preproccessing by @carnisj in https://github.com/carnisj/bcdi/pull/314
Remove temporal coupling in Setup initialization by @carnisj in https://github.com/carnisj/bcdi/pull/315
Interpolation script by @clatlan in https://github.com/carnisj/bcdi/pull/318
Implement a method to interpolate into the laboratory frame by @carnisj in https://github.com/carnisj/bcdi/pull/319
Bump pillow from 9.1.1 to 9.3.0 by @dependabot in https://github.com/carnisj/bcdi/pull/321
Remove some temporal coupling in analysis.update_detector_angles by @carnisj in https://github.com/carnisj/bcdi/pull/320
Refactor 'preprocessing.center_fft' using inheritance by @carnisj in https://github.com/carnisj/bcdi/pull/322
Update python to 3.10 and dependencies by @carnisj in https://github.com/carnisj/bcdi/pull/323
prepare for version 0.2.9 by @carnisj in https://github.com/carnisj/bcdi/pull/325

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.8...v0.2.9

- Python
Published by carnisj over 3 years ago

What's Changed

Was using monitor even if "skip" by @DSimonne in https://github.com/carnisj/bcdi/pull/258
loader: allow loading of Eiger2M detector data at ID01BLISS by @carnisj in https://github.com/carnisj/bcdi/pull/260
Log dir by @carnisj in https://github.com/carnisj/bcdi/pull/262
build(deps): bump pillow from 9.1.0 to 9.1.1 by @dependabot in https://github.com/carnisj/bcdi/pull/263
Bug: provide the correct number of motor positions to xrayutilities Qconv for SIXS by @carnisj in https://github.com/carnisj/bcdi/pull/268
FEAT: Add option to skip unwrapping by @carnisj in https://github.com/carnisj/bcdi/pull/269
Add version function by @DSimonne in https://github.com/carnisj/bcdi/pull/270
Catch IndexError if fits on linecuts are not successful by @DSimonne in https://github.com/carnisj/bcdi/pull/272
Add support for ESRF ID27 beamline by @carnisj in https://github.com/carnisj/bcdi/pull/273
[Bug]: Add default command-line parameter "-f" for Jupyter Notebooks by @carnisj in https://github.com/carnisj/bcdi/pull/275
Move the correction of detector angles before the calculation of q_bragg by @carnisj in https://github.com/carnisj/bcdi/pull/283
use distinct names for pre- and postprocessing log files by @carnisj in https://github.com/carnisj/bcdi/pull/281
use centering_method in the bragg peak location calculation by @carnisj in https://github.com/carnisj/bcdi/pull/278
Support new detector at SixS and new alias dict by @DSimonne in https://github.com/carnisj/bcdi/pull/279
FEAT: Enable energy scans at CRISTAL by @carnisj in https://github.com/carnisj/bcdi/pull/277
Bug: fix binning value of first axis in find_bragg by @carnisj in https://github.com/carnisj/bcdi/pull/286
Bug: create save_dir before running scripts by @carnisj in https://github.com/carnisj/bcdi/pull/287
Bug: override centering_method when the Bragg peak position is provided by @carnisj in https://github.com/carnisj/bcdi/pull/289
Allow sample_name to be an empty string. by @carnisj in https://github.com/carnisj/bcdi/pull/292
Update detector.py by @dzhigaevd in https://github.com/carnisj/bcdi/pull/293
Improve the robustness of fit_linecut by @carnisj in https://github.com/carnisj/bcdi/pull/294
Add plot to check qualitatively the centering method by @carnisj in https://github.com/carnisj/bcdi/pull/291
Release 0.2.8 by @carnisj in https://github.com/carnisj/bcdi/pull/295

New Contributors

@dependabot made their first contribution in https://github.com/carnisj/bcdi/pull/263

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.7...v0.2.8

- Python
Published by carnisj almost 4 years ago

What's Changed

use multiprocessing for strain.py by @carnisj in https://github.com/carnisj/bcdi/pull/253
implement preprocessing.process_scan by @carnisj in https://github.com/carnisj/bcdi/pull/254
Implement multiprocessing for the preprocessing by @carnisj in https://github.com/carnisj/bcdi/pull/255
Use isort to check the format of imports by @carnisj in https://github.com/carnisj/bcdi/pull/256
prepare for release v0.2.7 by @carnisj in https://github.com/carnisj/bcdi/pull/257

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.6...v0.2.7

- Python
Published by carnisj about 4 years ago

What's Changed

Use turbo as the default colormap by @carnisj in https://github.com/carnisj/bcdi/pull/244
Add a description of sample_offsets in the documentation by @carnisj in https://github.com/carnisj/bcdi/pull/245
Implement a linecut of the modulus in postprocessing by @carnisj in https://github.com/carnisj/bcdi/pull/246
Add a 'colormap' parameter to the config by @carnisj in https://github.com/carnisj/bcdi/pull/248
Silent mode by @carnisj in https://github.com/carnisj/bcdi/pull/249
test installing bcdi in CI by @carnisj in https://github.com/carnisj/bcdi/pull/250
Refactor parameter checks by @carnisj in https://github.com/carnisj/bcdi/pull/251
Implement large unit tests for runners by @carnisj in https://github.com/carnisj/bcdi/pull/252

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.5...v0.2.6

- Python
Published by carnisj about 4 years ago

What's Changed

Set command line parameters as optional by @carnisj in https://github.com/carnisj/bcdi/pull/231
Id01bliss by @clatlan in https://github.com/carnisj/bcdi/pull/233
Refactor: group loading methods in a new abstract class Loader by @carnisj in https://github.com/carnisj/bcdi/pull/228
Open files within context managers by @carnisj in https://github.com/carnisj/bcdi/pull/236
implement __repr__ such that eval(repr(instance)) is an instance by @carnisj in https://github.com/carnisj/bcdi/pull/237
Fix figure saving issue by @DSimonne in https://github.com/carnisj/bcdi/pull/239
Release constraint on skimage version by @carnisj in https://github.com/carnisj/bcdi/pull/241
Use fixed version numbers in dependencies by @carnisj in https://github.com/carnisj/bcdi/pull/242

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.3...v0.2.5

- Python
Published by carnisj about 4 years ago

What's Changed

add numpy, ipywidgets and pandas to autodocmockimports by @carnisj in https://github.com/carnisj/bcdi/pull/227
Bug: apply correctly binning to the pixel size used in the transformation matrices by @carnisj in https://github.com/carnisj/bcdi/pull/229

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.2...v0.2.3

- Python
Published by carnisj over 4 years ago

The main added feature for this release is the automatic correction of detector angles within the main scripts, so that the user does not need to think about it anymore. Also, the documentation was greatly improved with the addition of an example using real experimental data available publicly.

What's Changed

Deepsource by @carnisj in https://github.com/carnisj/bcdi/pull/217
Correct angles by @DSimonne in https://github.com/carnisj/bcdi/pull/221
Include the correction of detector angles in Setup by @carnisj in https://github.com/carnisj/bcdi/pull/218
use the correct number of values to unpack (detector distance missing) by @carnisj in https://github.com/carnisj/bcdi/pull/222
Create an example using a dataset from the CXIDB by @carnisj in https://github.com/carnisj/bcdi/pull/212
move run function from scripts to a module by @carnisj in https://github.com/carnisj/bcdi/pull/224
Prepare for release v0.2.2 by @carnisj in https://github.com/carnisj/bcdi/pull/225
update the documentation by @carnisj in https://github.com/carnisj/bcdi/pull/226

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.2.1...v0.2.2

- Python
Published by carnisj over 4 years ago

bcdi - v0.2.1

Release after implementing argument parsing from config files / command line.

What's Changed

Argument parser by @clatlan in https://github.com/carnisj/bcdi/pull/183
update comments relative to spec files by @carnisj in https://github.com/carnisj/bcdi/pull/198
Bug: use the correct key for the config file by @carnisj in https://github.com/carnisj/bcdi/pull/200
Update CONTRIBUTING.md by @carnisj in https://github.com/carnisj/bcdi/pull/201
open the pop-up window in data_dir if specified by @carnisj in https://github.com/carnisj/bcdi/pull/202
Gui dev by @DSimonne in https://github.com/carnisj/bcdi/pull/199
Update the parameter "Linearity_function" by @carnisj in https://github.com/carnisj/bcdi/pull/203
add support in preprocessing for 34ID-C by @carnisj in https://github.com/carnisj/bcdi/pull/204
return the transformation matrix from the detector frame to the laboratory frame by @carnisj in https://github.com/carnisj/bcdi/pull/208
Add task in doit to check broken links in the doc by @carnisj in https://github.com/carnisj/bcdi/pull/211
Implement the chi circle for 34ID-C by @carnisj in https://github.com/carnisj/bcdi/pull/205
Load positions from the log file when available (Lazy user) by @carnisj in https://github.com/carnisj/bcdi/pull/214

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.1.7...v0.2.1

- Python
Published by carnisj over 4 years ago

bcdi - v0.1.7

Release after the bcdi hackweek

What's Changed

update the documentation by @carnisj in https://github.com/carnisj/bcdi/pull/118
Bcdi hackweek by @sjleake in https://github.com/carnisj/bcdi/pull/117
Update the documentation by @carnisj in https://github.com/carnisj/bcdi/pull/119
define class diagrams in mermaid instead of using autoclasstree by @carnisj in https://github.com/carnisj/bcdi/pull/120
update the documentation by @carnisj in https://github.com/carnisj/bcdi/pull/121
add unit tests by @carnisj in https://github.com/carnisj/bcdi/pull/122
add unit tests for the module beamline.py by @carnisj in https://github.com/carnisj/bcdi/pull/123
Update index.md by @sjleake in https://github.com/carnisj/bcdi/pull/124
update README.rst by @carnisj in https://github.com/carnisj/bcdi/pull/125
Update CONTRIBUTING.md by @sjleake in https://github.com/carnisj/bcdi/pull/128
Refactor bcdifacetstrain.py by @carnisj in https://github.com/carnisj/bcdi/pull/129
Refactor: rename utilities.isnumeric to isfloat by @carnisj in https://github.com/carnisj/bcdi/pull/132
Test by @mirichard-S in https://github.com/carnisj/bcdi/pull/140
Doc by @duprazm in https://github.com/carnisj/bcdi/pull/142
simplify the pull request template by @carnisj in https://github.com/carnisj/bcdi/pull/149
Update docstring of RotationMatrix by @carnisj in https://github.com/carnisj/bcdi/pull/148
Gather published article/dataset in a paragraph in README by @carnisj in https://github.com/carnisj/bcdi/pull/143
polyMaker class by @sjleake in https://github.com/carnisj/bcdi/pull/150
Update README.rst by @sjleake in https://github.com/carnisj/bcdi/pull/161
Update README.rst by @DzhigaevD in https://github.com/carnisj/bcdi/pull/164
allow gridding d2scan in preprocessing by @carnisj in https://github.com/carnisj/bcdi/pull/166
Update CONTRIBUTING.md by @carnisj in https://github.com/carnisj/bcdi/pull/171
Merge the subpackge facet_recognition into postprocessing by @carnisj in https://github.com/carnisj/bcdi/pull/170
Define default sample offsets for P10 by @carnisj in https://github.com/carnisj/bcdi/pull/168
videos from hackweek added to documentation, temporary hackweek dir removed by @sjleake in https://github.com/carnisj/bcdi/pull/174
Modify list formatting for better rendering by @carnisj in https://github.com/carnisj/bcdi/pull/176
Create generic functions for dataset alignment by @carnisj in https://github.com/carnisj/bcdi/pull/173
Allow the user to provide the path to the data directory by @carnisj in https://github.com/carnisj/bcdi/pull/178
Bug: correct the detector horizontal orientation and update unit tests by @carnisj in https://github.com/carnisj/bcdi/pull/175
Add Mypy for type checking in the workflows by @carnisj in https://github.com/carnisj/bcdi/pull/184
Devel by @DSimonne in https://github.com/carnisj/bcdi/pull/179
Refactor: split interprgitranslation and make it dimension-agnostic by @carnisj in https://github.com/carnisj/bcdi/pull/180
process 34id specfile by @carnisj in https://github.com/carnisj/bcdi/pull/188
Update the documentation by @carnisj in https://github.com/carnisj/bcdi/pull/194
[Bug] Apply correctly the linearity function by @carnisj in https://github.com/carnisj/bcdi/pull/196

New Contributors

@mirichard-S made their first contribution in https://github.com/carnisj/bcdi/pull/140
@duprazm made their first contribution in https://github.com/carnisj/bcdi/pull/142
@DzhigaevD made their first contribution in https://github.com/carnisj/bcdi/pull/164
@DSimonne made their first contribution in https://github.com/carnisj/bcdi/pull/179

Full Changelog: https://github.com/carnisj/bcdi/compare/v0.1.6...v0.1.7

- Python
Published by carnisj over 4 years ago

bcdi -

version 0.1.6

Create BeamlineP10Saxs and DiffractometerP10Saxs child classes.

As a side effect:

split preprocessingutils in two new modules bcdiutils and cdi_utils
all generic functions from preprocessing_utils are moved to utilities

Write some unit tests, coverage for detector.py is 99%