https://github.com/breeding-insight/bigapp-panelhub
Metadata store of marker panels for BIGapp downstream workflows
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (3.6%) to scientific vocabulary
Last synced: 9 months ago
·
JSON representation
Repository
Metadata store of marker panels for BIGapp downstream workflows
Basic Info
- Host: GitHub
- Owner: Breeding-Insight
- Default Branch: main
- Size: 1.9 MB
Statistics
- Stars: 0
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 0
Created about 1 year ago
· Last pushed 12 months ago
Metadata Files
Readme
README.md
BIGapp-PanelHub
A central metadata repository of marker-panel definitions for downstream workflows in BIGapp and BIGr.
.botloci Files
- Purpose: Enumerate all marker IDs for which bottom-strand probes were designed.
- Workflow Role: During MADC-to-VCF conversion, these files tell BIGapp/BIGr exactly which sequences to extract as reverse complements.
- Format: Plain-text lists—one marker ID per line (optionally namespaced by panel or species).
For full usage details, file format specifications, and version history, see the BIGapp and BIGr functions madc2vcf_all and madc2vcf_targets documentations.
Owner
- Name: Breeding Insight
- Login: Breeding-Insight
- Kind: organization
- Website: https://breedinginsight.org
- Repositories: 12
- Profile: https://github.com/Breeding-Insight
Combining genomics and informatics to accelerate genetic gains.
GitHub Events
Total
- Push event: 2
- Public event: 1
- Create event: 1
Last Year
- Push event: 2
- Public event: 1
- Create event: 1