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https://github.com/breeding-insight/brapi

A java project with modules to interact with BrAPI data.

https://github.com/breeding-insight/brapi

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.8%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

A java project with modules to interact with BrAPI data.

Basic Info
  • Host: GitHub
  • Owner: Breeding-Insight
  • License: apache-2.0
  • Language: Java
  • Default Branch: develop
  • Size: 2.25 MB
Statistics
  • Stars: 4
  • Watchers: 6
  • Forks: 1
  • Open Issues: 7
  • Releases: 4
Created about 6 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

brapi

FOSSA Status

Java libraries for modeling BrAPI objects (brapi-java-model) and interacting with external BrAPI services (brapi-java-client) in the JVM

See https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Core/2.1
See https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Phenotyping/2.1
See https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Genotyping/2.1
See https://app.swaggerhub.com/apis/PlantBreedingAPI/BrAPI-Germplasm/2.1

Integration

Maven:

xml <dependency> <groupId>org.brapi</groupId> <artifactId>brapi-java-client</artifactId> <version>${brapi-java-client.version}</version> </dependency> ... <dependency> <groupId>org.brapi</groupId> <artifactId>brapi-java-model</artifactId> <version>${brapi-java-model.version}</version> </dependency>

Referencing Snapshots: Add the Nexus Sonatype Snapshots repository to your pom:

xml <repository> <id>ossrh</id> <url>https://s01.oss.sonatype.org/content/repositories/snapshots/</url> <releases> <enabled>false</enabled> </releases> </repository>

Development Environment Setup

This project uses lombok so your development environment has to be configured to handle the lombok annotations. Instructions for popular editors are available here.

Building the project

If using IntelliJ, create a new configuration for Maven to build your project.

Working Directory: <your_path>/brapi Command: clean install

If not using IntelliJ, running the command

mvn clean install

when in your brapi directory will build the project.

Running the tests

You can run all the tests running mvn test.

License

FOSSA Status

Owner

  • Name: Breeding Insight
  • Login: Breeding-Insight
  • Kind: organization

Combining genomics and informatics to accelerate genetic gains.

GitHub Events

Total
  • Watch event: 1
  • Push event: 2
  • Pull request review event: 2
  • Pull request event: 2
  • Create event: 6
Last Year
  • Watch event: 1
  • Push event: 2
  • Pull request review event: 2
  • Pull request event: 2
  • Create event: 6

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • kamathprasad9 (1)
Pull Request Authors
  • nickpalladino (3)
  • mlm483 (3)
  • HMS17 (1)
Top Labels
Issue Labels
Pull Request Labels
bug (1) feature (1)

Dependencies

brapi-java-client/pom.xml maven
  • com.google.code.gson:gson 2.8.5
  • com.squareup.okhttp3:okhttp 4.1.0
  • org.apache.commons:commons-lang3 ${apache-commons-lang.version}
  • org.brapi:brapi-java-model 2.0-SNAPSHOT
  • org.mockito:mockito-core 3.2.4 test
  • org.mockito:mockito-inline 2.13.0 test
brapi-java-model/pom.xml maven
  • com.fasterxml.jackson.core:jackson-annotations ${jackson.annotations.version}
  • com.github.filosganga:geogson-core 1.2.21
  • javax.validation:validation-api ${javax.validation.version}
  • org.threeten:threetenbp 1.5.0
pom.xml maven
  • org.projectlombok:lombok 1.18.16 provided
  • org.junit.jupiter:junit-jupiter 5.6.1 test
.github/workflows/build.yml actions
  • actions/checkout v2 composite
  • actions/setup-java v2 composite
.github/workflows/package-deploy.yml actions
  • actions/checkout v2 composite
  • actions/setup-java v2 composite
.github/workflows/pr-labeler.yml actions
  • TimonVS/pr-labeler-action v3 composite
.github/workflows/release-drafter.yml actions
  • release-drafter/release-drafter v5 composite