Recent Releases of https://github.com/brentp/fraguracy
https://github.com/brentp/fraguracy - v0.2.6
What's Changed
- add lua expressions to skip reads
- better error message when no bams are given
- fix reporting when neither read matches the reference
- Fix overflow when reporting stats for reads longer than 255 bp by @pontushojer in https://github.com/brentp/fraguracy/pull/12
New Contributors
- @pontushojer made their first contribution in https://github.com/brentp/fraguracy/pull/12
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.2.5...v0.2.6
- Rust
Published by brentp about 1 year ago
https://github.com/brentp/fraguracy - respect include/exclude
- respect include and exclude for indels and denominator calculation (thanks Jason for reporting)
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.2.4...v0.2.5
- Rust
Published by brentp over 1 year ago
https://github.com/brentp/fraguracy - bug-fixes
v0.2.4
- Allow chromosomes longer than u8::MAX (#11 thanks @pontushojer for reporting)
- Fix: when an include region was given and a non-seen chromosome was queried, it would return all intervals in that chromosome (#10 thanks Jason)
- Rust
Published by brentp over 1 year ago
https://github.com/brentp/fraguracy - v0.2.3
more work on homopolymer distance
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.2.2...v0.2.3
- Rust
Published by brentp over 1 year ago
https://github.com/brentp/fraguracy - fix homopolymer distance
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.2.1...v0.2.2
- Rust
Published by brentp over 1 year ago
https://github.com/brentp/fraguracy - v0.2.1
This release adds tracking for distance of an error to a homopolymer (as defined by a user-regex).
It also optionally writes a denominator.bed file to see how many total overlapping read bases were sampled for each site.
Most information will be in the -counts.txt file.
The files output from this release will be incompatible with files from previous releases and this version of fraguracy will not work with files from previous releases.
Thanks to Jason K for driving the testing and features in this release.
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.1.9...v0.2.1
- Rust
Published by brentp over 1 year ago
https://github.com/brentp/fraguracy - tracking indel errors
This release adds tracking of indel errors (differences between overlaps in paired-end reads). It outputs a separate bed file.
What's Changed
- track indel errors by @brentp in https://github.com/brentp/fraguracy/pull/5
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.1.8...v0.1.9
- Rust
Published by brentp about 3 years ago
https://github.com/brentp/fraguracy - fix combine-errors
- Rust
Published by brentp about 3 years ago
https://github.com/brentp/fraguracy - better error messages
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.1.6...v0.1.7
- Rust
Published by brentp about 3 years ago
https://github.com/brentp/fraguracy - bugfix in combine-errors
Full Changelog: https://github.com/brentp/fraguracy/compare/v0.1.5...v0.1.6
Fix bug in combine-errors (#4 )
- Rust
Published by brentp over 3 years ago
https://github.com/brentp/fraguracy - better combine to help parallelization
- Rust
Published by brentp over 3 years ago
https://github.com/brentp/fraguracy - include, exclude regions, usability
add --regions and --exclude-regions.
- Rust
Published by brentp over 3 years ago
https://github.com/brentp/fraguracy - minor fixes
previous release would error if the consensus base was not A/C/T/G. This just warns. This release also notes the position of the error in errors.bed when an error is found, but it's not known which read (1 or 2) it is from.
- Rust
Published by brentp over 3 years ago
https://github.com/brentp/fraguracy - multiple samples (in parallel)
fraguracy can no accept *.bam from multiple samples. It will write per-sample files (using SM from read-group) and also a sum across samples for both error and counts files.
- Rust
Published by brentp over 3 years ago