https://github.com/brickmanlab/proks-salehin-et-al
Deep Learning Based Models for Preimplantation Mouse and Human Development
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 5 DOI reference(s) in README -
✓Academic publication links
Links to: biorxiv.org, zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.5%) to scientific vocabulary
Keywords
Repository
Deep Learning Based Models for Preimplantation Mouse and Human Development
Basic Info
- Host: GitHub
- Owner: brickmanlab
- Language: Jupyter Notebook
- Default Branch: master
- Homepage: https://brickmanlab.github.io/proks-salehin-et-al/
- Size: 76.7 MB
Statistics
- Stars: 4
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
title: proks-salehin-et-al date: "16-02-2024"
author: Martin Proks, Nazmus Salehin
Deep Learning Based Models for Preimplantation Mouse and Human Development
- Tutorial:
- Datasets:
- Trained models: https://huggingface.co/brickmanlab
- Portal: https://brickman-preimplantation.streamlit.app
- Portal codebase: https://github.com/brickmanlab/preimplantation-portal
- bioRxiv paper: https://www.biorxiv.org/content/10.1101/2024.02.16.580649v1
Installation
bash
mamba env create -p /home/fdb589/projects/data/Brickman/conda/envs/scvi-1.0.0 -f environment.yml
Package f2 has to be installed manually, follow these steps.
Note: If you have issues with cuda make sure the loaded modules are on the same version
as the pip jaxlib and nvidia-cudnn-cu11.
Running
bash
module load cuda/11.8-dangpu cudnn/8.6.0-dangpu miniconda/latest && source activate brickman
jupyter-lab --no-browser
Owner
- Name: Brickman group
- Login: brickmanlab
- Kind: organization
- Location: Copenhagen
- Website: https://danstem.ku.dk/research1/brickman/
- Repositories: 3
- Profile: https://github.com/brickmanlab
Professor Joshua Brickman at Center for Stem Cell Medicine (reNEW), University of Copenhagen
GitHub Events
Total
- Watch event: 7
- Push event: 3
Last Year
- Watch event: 7
- Push event: 3