https://github.com/brickmanlab/riveiro-et-al-2023
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 4 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.3%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: brickmanlab
- Language: Jupyter Notebook
- Default Branch: master
- Size: 31.8 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 1
Created over 3 years ago
· Last pushed over 2 years ago
Metadata Files
Readme
Owner
- Name: Brickman group
- Login: brickmanlab
- Kind: organization
- Location: Copenhagen
- Website: https://danstem.ku.dk/research1/brickman/
- Repositories: 3
- Profile: https://github.com/brickmanlab
Professor Joshua Brickman at Center for Stem Cell Medicine (reNEW), University of Copenhagen
GitHub Events
Total
Last Year
Dependencies
environment.yml
pypi
- absl-py ==1.4.0
- adjusttext ==0.8
- aiofiles ==22.1.0
- aiohttp ==3.8.4
- aiosignal ==1.3.1
- aiosqlite ==0.19.0
- anndata ==0.9.1
- anyio ==3.7.0
- argon2-cffi ==21.3.0
- argon2-cffi-bindings ==21.2.0
- arrow ==1.2.3
- asttokens ==2.2.1
- astunparse ==1.6.3
- async-timeout ==4.0.2
- attrs ==23.1.0
- backcall ==0.2.0
- beautifulsoup4 ==4.12.2
- bleach ==6.0.0
- blessed ==1.20.0
- blosc2 ==2.0.0
- brokenaxes ==0.5.0
- cached-property ==1.5.2
- cachetools ==5.3.1
- cattrs ==23.1.2
- cellrank ==2.0.1
- certifi ==2023.5.7
- cffi ==1.15.1
- charset-normalizer ==3.1.0
- chex ==0.1.7
- click ==8.1.3
- cloudpickle ==2.2.1
- cmake ==3.26.4
- comm ==0.1.3
- contextlib2 ==21.6.0
- contourpy ==1.1.0
- croniter ==1.3.15
- cycler ==0.11.0
- dateutils ==0.6.12
- debugpy ==1.6.7
- decorator ==5.1.1
- deepdiff ==6.3.0
- defusedxml ==0.7.1
- deprecated ==1.2.14
- dm-tree ==0.1.8
- docrep ==0.3.2
- elpigraph-python ==0.2.7
- equinox ==0.11.1
- et-xmlfile ==1.1.0
- etils ==1.3.0
- exceptiongroup ==1.1.1
- executing ==1.2.0
- fa2 ==0.3.5
- fastapi ==0.98.0
- fastjsonschema ==2.17.1
- fcsparser ==0.2.6
- filelock ==3.12.2
- flatbuffers ==23.5.26
- flax ==0.6.11
- fonttools ==4.40.0
- fqdn ==1.5.1
- frozenlist ==1.3.3
- fsspec ==2023.6.0
- future ==0.18.3
- gast ==0.4.0
- google-auth ==2.21.0
- google-auth-oauthlib ==1.0.0
- google-pasta ==0.2.0
- gprofiler-official ==1.0.0
- graphtools ==1.5.3
- grpcio ==1.51.3
- gtftools ==0.9.0
- h11 ==0.14.0
- h5py ==3.9.0
- hyperopt ==0.2.7
- idna ==3.4
- igraph ==0.10.4
- importlib-resources ==5.12.0
- inquirer ==3.1.3
- ipykernel ==6.23.2
- ipython ==8.14.0
- isoduration ==20.11.0
- itsdangerous ==2.1.2
- jax ==0.4.13
- jaxlib ==0.4.13
- jaxopt ==0.8.1
- jaxtyping ==0.2.23
- jedi ==0.18.2
- jinja2 ==3.0.3
- joblib ==1.2.0
- jsonpointer ==2.4
- jsonschema ==4.17.3
- jupyter-client ==8.2.0
- jupyter-collaboration ==1.0.0
- jupyter-core ==5.3.1
- jupyter-events ==0.6.3
- jupyter-server ==2.6.0
- jupyter-server-fileid ==0.9.0
- jupyter-server-terminals ==0.4.4
- jupyter-ydoc ==1.0.2
- jupyterlab-pygments ==0.2.2
- keras ==2.12.0
- kiwisolver ==1.4.4
- leidenalg ==0.9.1
- libclang ==16.0.0
- lightning ==2.0.4
- lightning-cloud ==0.5.37
- lightning-utilities ==0.8.0
- lineax ==0.0.3
- lit ==16.0.6
- llvmlite ==0.40.1
- loompy ==3.0.7
- markdown ==3.4.3
- markdown-it-py ==3.0.0
- markupsafe ==2.1.3
- matplotlib ==3.7.1
- matplotlib-inline ==0.1.6
- mdurl ==0.1.2
- mistune ==3.0.1
- ml-collections ==0.1.1
- ml-dtypes ==0.2.0
- mlxtend ==0.23.0
- moscot ==0.3.3
- mpmath ==1.3.0
- msgpack ==1.0.5
- mudata ==0.2.3
- multidict ==6.0.4
- multipledispatch ==0.6.0
- natsort ==8.4.0
- nbclient ==0.8.0
- nbconvert ==7.6.0
- nbformat ==5.9.0
- nest-asyncio ==1.5.6
- networkx ==2.8.8
- numba ==0.57.1
- numexpr ==2.8.4
- numpy ==1.23.5
- numpy-groupies ==0.9.22
- numpyro ==0.12.1
- nvidia-cublas-cu11 ==11.10.3.66
- nvidia-cuda-cupti-cu11 ==11.7.101
- nvidia-cuda-nvrtc-cu11 ==11.7.99
- nvidia-cuda-runtime-cu11 ==11.7.99
- nvidia-cudnn-cu11 ==8.6.0.163
- nvidia-cufft-cu11 ==10.9.0.58
- nvidia-curand-cu11 ==10.2.10.91
- nvidia-cusolver-cu11 ==11.4.0.1
- nvidia-cusparse-cu11 ==11.7.4.91
- nvidia-nccl-cu11 ==2.14.3
- nvidia-nvtx-cu11 ==11.7.91
- oauthlib ==3.2.2
- openpyxl ==3.1.2
- opt-einsum ==3.3.0
- optax ==0.1.5
- orbax-checkpoint ==0.2.6
- ordered-set ==4.1.0
- ott-jax ==0.4.4
- overrides ==7.3.1
- packaging ==23.1
- palantir ==1.2
- pandas ==1.5.3
- pandocfilters ==1.5.0
- parso ==0.8.3
- patsy ==0.5.3
- pexpect ==4.8.0
- phate ==1.0.11
- phenograph ==1.5.7
- pickleshare ==0.7.5
- pillow ==9.5.0
- platformdirs ==3.8.0
- plotly ==5.15.0
- plottable ==0.1.5
- progressbar2 ==4.2.0
- prometheus-client ==0.17.0
- prompt-toolkit ==3.0.38
- protobuf ==4.23.3
- psutil ==5.9.5
- ptyprocess ==0.7.0
- pure-eval ==0.2.2
- py-cpuinfo ==9.0.0
- py4j ==0.10.9.7
- pyaml ==23.9.7
- pyarrow ==12.0.1
- pyasn1 ==0.5.0
- pyasn1-modules ==0.3.0
- pybiomart ==0.2.0
- pycparser ==2.21
- pydantic ==1.10.9
- pygam ==0.9.0
- pygments ==2.15.1
- pygpcca ==1.0.4
- pygsp ==0.5.1
- pyjwt ==2.7.0
- pymde ==0.1.18
- pynndescent ==0.5.10
- pyparsing ==3.1.0
- pyro-api ==0.1.2
- pyro-ppl ==1.8.5
- pyrsistent ==0.19.3
- python-dateutil ==2.8.2
- python-editor ==1.0.4
- python-igraph ==0.10.4
- python-json-logger ==2.0.7
- python-multipart ==0.0.6
- python-utils ==3.7.0
- pytorch-lightning ==2.0.4
- pytz ==2023.3
- pyyaml ==6.0
- pyzmq ==25.1.0
- ray ==2.5.1
- readchar ==4.0.5
- requests ==2.31.0
- requests-cache ==1.1.0
- requests-oauthlib ==1.3.1
- rfc3339-validator ==0.1.4
- rfc3986-validator ==0.1.1
- rich ==13.6.0
- rsa ==4.9
- s-gd2 ==1.8.1
- scanpy ==1.9.3
- scfates ==1.0.2
- scgen ==2.1.1
- scib-metrics ==0.3.3
- scienceplots ==2.1.1
- scikit-learn ==1.2.2
- scikit-optimize ==0.9.0
- scipy ==1.10.1
- scprep ==1.2.3
- scvelo ==0.2.5
- scvi-tools ==1.0.0
- seaborn ==0.11.2
- send2trash ==1.8.2
- session-info ==1.0.0
- shap ==0.41.0
- shapely ==2.0.1
- simpleppt ==1.1.3
- six ==1.16.0
- slicer ==0.0.7
- sniffio ==1.3.0
- soupsieve ==2.4.1
- sparse ==0.14.0
- stack-data ==0.6.2
- starlette ==0.27.0
- starsessions ==1.3.0
- statannotations ==0.5.0
- statsmodels ==0.14.0
- stdlib-list ==0.9.0
- sympy ==1.12
- tables ==3.8.0
- tasklogger ==1.2.0
- tenacity ==8.2.2
- tensorboard ==2.12.3
- tensorboard-data-server ==0.7.1
- tensorboardx ==2.6.1
- tensorflow ==2.12.0
- tensorflow-estimator ==2.12.0
- tensorflow-io-gcs-filesystem ==0.32.0
- tensorstore ==0.1.39
- termcolor ==2.3.0
- terminado ==0.17.1
- texttable ==1.6.7
- threadpoolctl ==3.1.0
- tinycss2 ==1.2.1
- toolz ==0.12.0
- torch ==2.0.1
- torchmetrics ==0.11.4
- torchvision ==0.15.2
- tornado ==6.3.2
- tqdm ==4.65.0
- traitlets ==5.9.0
- triton ==2.0.0
- typeguard ==2.13.3
- typing-extensions ==4.6.3
- tzdata ==2023.3
- tzlocal ==5.0.1
- umap-learn ==0.5.3
- uri-template ==1.3.0
- url-normalize ==1.4.3
- urllib3 ==1.26.16
- uvicorn ==0.22.0
- wcwidth ==0.2.6
- webcolors ==1.13
- webencodings ==0.5.1
- websocket-client ==1.6.0
- websockets ==11.0.3
- werkzeug ==2.3.6
- wrapt ==1.14.1
- xarray ==2023.5.0
- xgboost ==1.7.6
- y-py ==0.6.0
- yarl ==1.9.2
- ypy-websocket ==0.8.4