https://github.com/bridgedb/datasources
Repository with the BridgeDb data source.
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.5%) to scientific vocabulary
Keywords
bridgedb
life-sciences
registry
Last synced: 5 months ago
·
JSON representation
Repository
Repository with the BridgeDb data source.
Basic Info
Statistics
- Stars: 4
- Watchers: 7
- Forks: 7
- Open Issues: 3
- Releases: 0
Topics
bridgedb
life-sciences
registry
Created almost 5 years ago
· Last pushed 7 months ago
Metadata Files
Readme
License
README.md
datasources
Repository with the BridgeDb data source. The reason to abstract this out is that other tools no longer depend on updates of the BridgeDb Java library to use the information.
The following URLs can be used in downstream tools:
- https://bridgedb.github.io/datasources/datasources.tsv
- https://bridgedb.github.io/datasources/datasources_headers.tsv
- https://bridgedb.github.io/datasources/organisms.tsv
It includes interoperability layers with identifiers.org and Bioregistry.io.
Testing
There are tests for data integrity that can be run with the following commands in the shell:
bash
$ pip install tox
$ tox
Owner
- Name: BridgeDb
- Login: bridgedb
- Kind: organization
- Location: Netherlands
- Website: https://www.bridgedb.org/
- Repositories: 37
- Profile: https://github.com/bridgedb
GitHub Events
Total
- Issues event: 6
- Issue comment event: 4
- Push event: 3
- Pull request event: 1
- Create event: 1
Last Year
- Issues event: 6
- Issue comment event: 4
- Push event: 3
- Pull request event: 1
- Create event: 1
Issues and Pull Requests
Last synced: 5 months ago
All Time
- Total issues: 28
- Total pull requests: 24
- Average time to close issues: over 2 years
- Average time to close pull requests: about 1 month
- Total issue authors: 12
- Total pull request authors: 7
- Average comments per issue: 3.18
- Average comments per pull request: 1.67
- Merged pull requests: 19
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: 25 days
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 2.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- egonw (11)
- ariutta (4)
- cthoyt (2)
- AlexanderPico (2)
- DeniseSl22 (2)
- ianwdunlop (1)
- ithiele (1)
- fehrhart (1)
- tabbassidaloii (1)
- hasanbalci (1)
- stain (1)
- Chris-Evelo (1)
Pull Request Authors
- egonw (6)
- cthoyt (5)
- Finterly (4)
- DeniseSl22 (3)
- hbasaric (3)
- mkutmon (2)
- tabbassidaloii (1)
Top Labels
Issue Labels
help wanted (4)
enhancement (1)
question (1)
Pull Request Labels
enhancement (2)
Dependencies
.github/workflows/tests.yml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite