https://github.com/broadinstitute/gnomad-browser
Explore gnomAD datasets on the web
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
11 of 35 committers (31.4%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.5%) to scientific vocabulary
Keywords
genomics
gnomad
javascript
Keywords from Contributors
hail
genomes
exomes
bioinformatics
genetics
gwas
software
vcf
projection
interactive
Last synced: 6 months ago
·
JSON representation
Repository
Explore gnomAD datasets on the web
Basic Info
- Host: GitHub
- Owner: broadinstitute
- License: mit
- Language: TypeScript
- Default Branch: main
- Homepage: https://gnomad.broadinstitute.org
- Size: 45 MB
Statistics
- Stars: 84
- Watchers: 32
- Forks: 50
- Open Issues: 170
- Releases: 0
Topics
genomics
gnomad
javascript
Created over 8 years ago
· Last pushed 6 months ago
Metadata Files
Readme
Contributing
License
Security
README.md
gnomAD browser
JavaScript tools for exploring genomic data.
To view the gnomAD browser, go to https://gnomad.broadinstitute.org.
License
Licensed under the MIT license. See the LICENSE file.
Citation
For publications on software projects using code from the gnomAD browser, we request citing the following two papers:
- The mutational constraint spectrum quantified from variation in 141,456 humans
- The ExAC browser: displaying reference data information from over 60 000 exomes
For information on citing the gnomAD dataset, see the gnomAD Terms and Data Information.
Development
See CONTRIBUTING.md.
Owner
- Name: Broad Institute
- Login: broadinstitute
- Kind: organization
- Location: Cambridge, MA
- Website: http://www.broadinstitute.org/
- Twitter: broadinstitute
- Repositories: 1,083
- Profile: https://github.com/broadinstitute
Broad Institute of MIT and Harvard
GitHub Events
Total
- Issues event: 94
- Watch event: 4
- Delete event: 38
- Issue comment event: 92
- Push event: 358
- Pull request review comment event: 48
- Pull request review event: 94
- Pull request event: 138
- Fork event: 6
- Create event: 71
Last Year
- Issues event: 94
- Watch event: 4
- Delete event: 38
- Issue comment event: 92
- Push event: 358
- Pull request review comment event: 48
- Pull request review event: 94
- Pull request event: 138
- Fork event: 6
- Create event: 71
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Nick Watts | n****s@b****g | 2,693 |
| Matthew Solomonson | g****t@g****m | 653 |
| Riley Grant | g****h@g****m | 327 |
| Phil Darnowsky | p****s@b****g | 252 |
| sjahl | 6****l | 76 |
| dependabot[bot] | 4****] | 45 |
| Elissa Alarmani | 9****i | 37 |
| ch-kr | k****o@b****g | 29 |
| Laurent Francioli | l****n@b****g | 23 |
| Beryl Cummings | b****c | 21 |
| Mark Woodbridge | m****e@i****k | 19 |
| bw2 | b****d@g****m | 17 |
| Jalfoldi | j****i@b****g | 16 |
| Konrad Karczewski | k****i@g****m | 11 |
| ksamocha | k****a@g****m | 9 |
| ignatiusm | 1****m | 7 |
| Qin He | 4****n | 7 |
| Ryan L Collins | r****s@g****u | 6 |
| Mike Wilson | m****n@b****g | 5 |
| Joshua Nadeau | n****a@i****m | 4 |
| Phil Darnowsky | p****l@d****m | 4 |
| jkgoodrich | 3****h | 4 |
| Maxime HEBRARD | m****d@g****m | 3 |
| Guy Shechter | s****r@y****m | 3 |
| Kevin Nguyen | k****2@g****m | 2 |
| Riley Grant | r****t@b****g | 1 |
| Phil Darnowsky | p****s@w****g | 1 |
| Erica Mazaika | e****a@E****l | 1 |
| Daniel MacArthur | d****r@g****m | 1 |
| Jkmcameron | j****n@g****m | 1 |
| and 5 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 212
- Total pull requests: 363
- Average time to close issues: 7 months
- Average time to close pull requests: 26 days
- Total issue authors: 46
- Total pull request authors: 20
- Average comments per issue: 0.91
- Average comments per pull request: 0.48
- Merged pull requests: 244
- Bot issues: 0
- Bot pull requests: 42
Past Year
- Issues: 60
- Pull requests: 127
- Average time to close issues: 19 days
- Average time to close pull requests: 14 days
- Issue authors: 25
- Pull request authors: 11
- Average comments per issue: 0.37
- Average comments per pull request: 0.28
- Merged pull requests: 90
- Bot issues: 0
- Bot pull requests: 2
Top Authors
Issue Authors
- ch-kr (51)
- nawatts (42)
- rileyhgrant (23)
- mattsolo1 (19)
- phildarnowsky-broad (13)
- bw2 (10)
- sjahl (9)
- mike-w-wilson (4)
- msingerb (2)
- KoalaQin (2)
- benjaminsuljic (2)
- lush-ldw (1)
- FransDam29 (1)
- mikespiller1 (1)
- nadeaujoshua (1)
Pull Request Authors
- rileyhgrant (124)
- phildarnowsky-broad (58)
- nawatts (42)
- dependabot[bot] (42)
- sjahl (31)
- ch-kr (20)
- bw2 (12)
- nadeaujoshua (7)
- ignatiusm (5)
- mattsolo1 (5)
- jkgoodrich (3)
- augljesa1 (2)
- milo-hyben (2)
- said-pager (2)
- mike-w-wilson (2)
Top Labels
Issue Labels
Type: Bug (12)
Component: API (9)
Component: Data Pipeline (8)
Component: Infrastructure (8)
Resolution: Won't Do (5)
Blocked (3)
Resolution: Duplicate (2)
Type: Feature Request (2)
Component: User Documentation (2)
sre (2)
Type: Umbrella (1)
Epic (1)
Priority: High (1)
Performance (1)
Component: Developer Documentation (1)
Pull Request Labels
dependencies (42)
python (36)
javascript (6)
Priority: High (3)
Component: Infrastructure (3)
Blocked (2)
Type: Bug (2)
Component: Developer Documentation (1)
Next variant reload (1)