https://github.com/broadinstitute/profiling-resistance-mechanisms - Response to reviewers

Analysis changes in response to reviewers as solicited by Review Commons. @mekelley is introduced as an author on the code base.

What's Changed

• Adding files relevant to figure generation by @mekelley in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/125
• [Response to Reviewers] Add feature space analysis (UMAP and clustering) by @gwaybio in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/128
• [Response to Reviewers] Make feature space consistent size with PCA and plot multiple metrics by @gwaybio in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/129
• [Response to Reviewers] Adding analysis and visualization of misclassified samples by @gwaybio in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/130
• [Response to Reviewers] add signature summary visualization by @gwaybio in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/131
• [Response to Reviewers] Replace "all except bz" features with "random" features by @gwaybio in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/132
• Make clone labels consistent by @gwaybio in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/133

New Contributors

• @mekelley made their first contribution in https://github.com/broadinstitute/profiling-resistance-mechanisms/pull/125

Full Changelog: https://github.com/broadinstitute/profiling-resistance-mechanisms/compare/v1.0...v2.0

- Jupyter Notebook
Published by gwaybio almost 3 years ago

https://github.com/broadinstitute/profiling-resistance-mechanisms - Analysis for preprint

This repository contains all code to reproduce our preprint titled: "High-content microscopy reveals a morphological signature of bortezomib resistance"

- Jupyter Notebook
Published by gwaybio about 3 years ago