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Open Source Science

https://github.com/broadinstitute/cmqtl

High-dimensional phenotyping to define the genetic basis of cellular morphology

https://github.com/broadinstitute/cmqtl

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.0%) to scientific vocabulary

Keywords

carpenter-lab cellprofiler morphology primary-cells profiling quantitative-trait-loci
Last synced: 5 months ago · JSON representation

Repository

High-dimensional phenotyping to define the genetic basis of cellular morphology

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • License: bsd-3-clause
  • Language: Jupyter Notebook
  • Default Branch: master
  • Homepage:
  • Size: 108 MB
Statistics
  • Stars: 5
  • Watchers: 5
  • Forks: 0
  • Open Issues: 3
  • Releases: 0
Topics
carpenter-lab cellprofiler morphology primary-cells profiling quantitative-trait-loci
Created over 7 years ago · Last pushed about 3 years ago
Metadata Files
Readme License

README.md

Cell Morphology Quantitative Trait Loci (cmQTL)

High-dimensional phenotyping to define the genetic basis of cellular morphology

Reproducibility

To reproduce the computational environment, first fork and clone the repository, then create and activate the conda environment.

```bash

Using conda version > 4.6

conda env create --force --file environment.yml

Activate environment

conda activate cmqtl ```

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
  • Issues event: 1
Last Year
  • Issues event: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 56
  • Total pull requests: 72
  • Average time to close issues: 12 months
  • Average time to close pull requests: 12 days
  • Total issue authors: 4
  • Total pull request authors: 5
  • Average comments per issue: 11.43
  • Average comments per pull request: 0.08
  • Merged pull requests: 67
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • shntnu (17)
  • gwaybio (6)
  • jatinarora-upmc (5)
  • mtegtmey (3)
Pull Request Authors
  • shntnu (31)
  • gwaybio (8)
  • mtegtmey (2)
  • TiffanyAmariuta (2)
  • apnathan (1)
Top Labels
Issue Labels
Discussion and Notes (11) Experiments (3) enhancement (1) bug (1)
Pull Request Labels