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https://github.com/broadinstitute/2024_08_jamboree_jump

Repository to collect jamboree for JUMP Production paper

https://github.com/broadinstitute/2024_08_jamboree_jump

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
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    DOI references
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    Academic publication links
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    Institutional organization owner
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (6.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Repository to collect jamboree for JUMP Production paper

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • Language: Jupyter Notebook
  • Default Branch: master
  • Size: 4.65 MB
Statistics
  • Stars: 1
  • Watchers: 7
  • Forks: 2
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed almost 2 years ago
Metadata Files
Readme

readme.org 

#+TITLE: Jamboree

* Overall goal
Generate analyses/components that contribute to JUMP production
* Specific tasks
- [ ] Generate a general report of JUMP metadata:
  - [ ] How many different MoAs are available?
  - [ ] What is the distribution of plates per source?
- [ ] Develop a metric+method to quantify the biases for any pair of samples
- [ ] Write a set of examples on how to do different things:
  - [ ] Fetch one or multiple images
  - [ ] How to plot plates to find plate effects
  - [ ] How do we get a quick and informative overview of the data?
- [ ] MoAs (ChemoInformatics)
  - [ ] What compounds pathways do we cover?
  - [ ] Do morphological profiles match compounds with similar activity?
  - [ ] How well do MoAs cluster compared to others? (Can this be answered through MAP?)
* Resources
- Spreadsheet: https://docs.google.com/spreadsheets/d/1oQyTtCe1M4vkWmuy5uANJ42JPFgUmjV0ZhHByp0h3JA/edit?usp=sharing

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

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Last synced: over 1 year ago

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Top Authors
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  • jessica-ewald (4)
  • HugoHakem (2)
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