Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/broadinstitute/gnomad-sumstats-explorer

This repository contains a Shiny application designed for interactive exploration of individual-level summary statistics from the gnomAD dataset.

https://github.com/broadinstitute/gnomad-sumstats-explorer

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.7%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

This repository contains a Shiny application designed for interactive exploration of individual-level summary statistics from the gnomAD dataset.

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: main
  • Size: 3.68 MB
Statistics
  • Stars: 0
  • Watchers: 6
  • Forks: 0
  • Open Issues: 3
  • Releases: 0
Created almost 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

gnomAD summary statistics Shiny app explorer

This is a Shiny app that allows you to explore the gnomAD individual level summary statistics. The app is available at FILL ME IN.

Running locally

Install required packages

bash pip install -r requirements.txt

Run the app locally

bash shiny run gnomad_sumstats_explorer/app.py

You should see a message like this: INFO: Started server process [43622] INFO: Waiting for application startup. INFO: Application startup complete. INFO: Uvicorn running on http://127.0.0.1:8000 (Press CTRL+C to quit)

In your browser, navigate to the URL in the last line of the output (in this case, http://127.0.0.1:8000).

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
  • Delete event: 3
  • Issue comment event: 5
  • Member event: 1
  • Push event: 8
  • Pull request review event: 1
  • Pull request event: 6
  • Create event: 7
Last Year
  • Delete event: 3
  • Issue comment event: 5
  • Member event: 1
  • Push event: 8
  • Pull request review event: 1
  • Pull request event: 6
  • Create event: 7

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 8
  • Total Committers: 1
  • Avg Commits per committer: 8.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 8
  • Committers: 1
  • Avg Commits per committer: 8.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
jkgoodrich 3****h 8

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 7
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 hour
  • Total issue authors: 0
  • Total pull request authors: 4
  • Average comments per issue: 0
  • Average comments per pull request: 0.71
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 4
Past Year
  • Issues: 0
  • Pull requests: 7
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 hour
  • Issue authors: 0
  • Pull request authors: 4
  • Average comments per issue: 0
  • Average comments per pull request: 0.71
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 4
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • dependabot[bot] (5)
  • ch-kr (2)
  • jkgoodrich (2)
  • sjahl (1)
Top Labels
Issue Labels
Pull Request Labels
dependencies (5)

Dependencies

.github/workflows/ci.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
pyproject.toml pypi
requirements-dev.in pypi
  • autopep8 ==2.0.2 development
  • black ==24.4.2 development
  • isort ==5.12.0 development
  • pre-commit * development
  • pydocstyle ==6.3.0 development
  • pylint * development
requirements-dev.txt pypi
  • astroid ==3.2.4 development
  • autopep8 ==2.0.2 development
  • black ==24.4.2 development
  • cfgv ==3.4.0 development
  • click ==8.1.7 development
  • dill ==0.3.8 development
  • distlib ==0.3.8 development
  • filelock ==3.15.4 development
  • identify ==2.6.0 development
  • isort ==5.12.0 development
  • mccabe ==0.7.0 development
  • mypy-extensions ==1.0.0 development
  • nodeenv ==1.9.1 development
  • packaging ==24.1 development
  • pathspec ==0.12.1 development
  • platformdirs ==4.2.2 development
  • pre-commit ==3.7.1 development
  • pycodestyle ==2.12.0 development
  • pydocstyle ==6.3.0 development
  • pylint ==3.2.6 development
  • pyyaml ==6.0.1 development
  • snowballstemmer ==2.2.0 development
  • tomlkit ==0.13.0 development
  • virtualenv ==20.26.3 development
requirements.txt pypi
  • faicons *
  • pandas *
  • plotly *
  • seaborn *
  • shiny *
  • shinywidgets *