Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/broadinstitute/gnomad-browser-toolkit

Components for building genomic data browsers

https://github.com/broadinstitute/gnomad-browser-toolkit

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 10 committers (30.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.0%) to scientific vocabulary

Keywords from Contributors

genomics gnomad bioinformatics labels gwas software vcf hail
Last synced: 10 months ago · JSON representation

Repository

Components for building genomic data browsers

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • License: mit
  • Language: JavaScript
  • Default Branch: main
  • Homepage:
  • Size: 2.77 MB
Statistics
  • Stars: 9
  • Watchers: 12
  • Forks: 6
  • Open Issues: 8
  • Releases: 33
Created about 6 years ago · Last pushed about 1 year ago
Metadata Files
Readme Contributing License

README.md

gnomAD Browser Toolkit

A collection of reusable components and tools for building genomic data browsers.

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
  • Issues event: 7
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 34
  • Pull request review event: 3
  • Pull request event: 6
  • Fork event: 3
  • Create event: 3
Last Year
  • Issues event: 7
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 34
  • Pull request review event: 3
  • Pull request event: 6
  • Fork event: 3
  • Create event: 3

Committers

Last synced: about 3 years ago

All Time
  • Total Commits: 1,082
  • Total Committers: 10
  • Avg Commits per committer: 108.2
  • Development Distribution Score (DDS): 0.36
Past Year
  • Commits: 12
  • Committers: 3
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.583
Top Committers
Name Email Commits
Nick Watts n****s@b****g 692
Matthew Solomonson g****t@g****m 338
dependabot[bot] 4****]@u****m 24
Huy Nguyen h****n@u****m 13
Phil Darnowsky p****s@b****g 4
Mark Woodbridge m****e@i****k 3
Steve Jahl 6****l@u****m 3
Kevin Nguyen k****2@g****m 2
Nick Watts 1****s@u****m 2
Huy Nguyen me@h****v 1
Committer Domains (Top 20 + Academic)
broadinstitute.org: 2 huy.dev: 1 imperial.ac.uk: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 27
  • Total pull requests: 97
  • Average time to close issues: 4 months
  • Average time to close pull requests: 24 days
  • Total issue authors: 5
  • Total pull request authors: 6
  • Average comments per issue: 0.19
  • Average comments per pull request: 0.32
  • Merged pull requests: 77
  • Bot issues: 0
  • Bot pull requests: 42
Past Year
  • Issues: 4
  • Pull requests: 8
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 6 days
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • nawatts (16)
  • mattsolo1 (5)
  • rileyhgrant (3)
  • phildarnowsky-broad (2)
  • huy-nguyen (1)
  • dependabot[bot] (1)
Pull Request Authors
  • dependabot[bot] (56)
  • nawatts (25)
  • huy-nguyen (13)
  • phildarnowsky-broad (11)
  • sjahl (5)
  • mattsolo1 (3)
Top Labels
Issue Labels
bug (1) dependencies (1)
Pull Request Labels
dependencies (56)

Packages

  • Total packages: 10
  • Total downloads:
    • npm 1,774 last-month
  • Total dependent packages: 16
    (may contain duplicates)
  • Total dependent repositories: 32
    (may contain duplicates)
  • Total versions: 104
  • Total maintainers: 3
npmjs.org: @gnomad/region-viewer
  • Versions: 12
  • Dependent Packages: 5
  • Dependent Repositories: 5
  • Downloads: 212 Last month
Rankings
Dependent packages count: 3.7%
Dependent repos count: 5.0%
Average: 7.2%
Downloads: 8.2%
Forks count: 8.9%
Stargazers count: 10.0%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 10 months ago
npmjs.org: @gnomad/ui
  • Versions: 10
  • Dependent Packages: 2
  • Dependent Repositories: 4
  • Downloads: 206 Last month
Rankings
Dependent repos count: 5.7%
Dependent packages count: 8.9%
Forks count: 9.1%
Stargazers count: 10.3%
Average: 11.1%
Downloads: 21.6%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/track-regions
  • Versions: 11
  • Dependent Packages: 2
  • Dependent Repositories: 5
  • Downloads: 201 Last month
Rankings
Dependent repos count: 5.2%
Dependent packages count: 8.9%
Forks count: 9.1%
Stargazers count: 10.3%
Average: 11.4%
Downloads: 23.6%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/identifiers

Recognize and parse different forms of variant and region identifiers.

  • Versions: 13
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 329 Last month
Rankings
Dependent repos count: 7.6%
Forks count: 8.9%
Stargazers count: 10.0%
Downloads: 10.5%
Average: 11.6%
Dependent packages count: 20.9%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/track-variants
  • Versions: 11
  • Dependent Packages: 1
  • Dependent Repositories: 4
  • Downloads: 246 Last month
Rankings
Dependent repos count: 5.7%
Forks count: 9.1%
Stargazers count: 10.3%
Average: 11.8%
Downloads: 12.7%
Dependent packages count: 21.3%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/track-genes
  • Versions: 14
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 138 Last month
Rankings
Dependent repos count: 7.6%
Forks count: 8.9%
Stargazers count: 10.0%
Average: 11.9%
Downloads: 12.3%
Dependent packages count: 20.9%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/markdown-loader
  • Versions: 7
  • Dependent Packages: 1
  • Dependent Repositories: 4
  • Downloads: 119 Last month
Rankings
Dependent repos count: 5.6%
Forks count: 8.9%
Stargazers count: 10.0%
Average: 12.3%
Downloads: 16.0%
Dependent packages count: 20.9%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/track-transcripts
  • Versions: 12
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 230 Last month
Rankings
Dependent repos count: 7.6%
Forks count: 8.9%
Stargazers count: 10.0%
Average: 12.3%
Downloads: 14.2%
Dependent packages count: 20.9%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/qq-plot
  • Versions: 8
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 4 Last month
Rankings
Dependent repos count: 7.6%
Forks count: 8.9%
Stargazers count: 10.0%
Average: 13.3%
Downloads: 19.3%
Dependent packages count: 20.9%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: 11 months ago
npmjs.org: @gnomad/manhattan-plot
  • Versions: 6
  • Dependent Packages: 1
  • Dependent Repositories: 2
  • Downloads: 89 Last month
Rankings
Dependent repos count: 7.6%
Forks count: 8.9%
Stargazers count: 10.0%
Average: 13.7%
Dependent packages count: 20.9%
Downloads: 21.3%
Maintainers (3)
rileyhgrant pdarnowsky-broad mattsolo1
Last synced: about 1 year ago

Dependencies

package.json npm
  • @babel/cli ^7.8.4 development
  • @babel/core ^7.9.0 development
  • @babel/plugin-proposal-class-properties ^7.8.3 development
  • @babel/plugin-transform-runtime ^7.9.0 development
  • @babel/preset-env ^7.9.0 development
  • @babel/preset-react ^7.9.4 development
  • @babel/preset-typescript 7.10.1 development
  • @testing-library/jest-dom ^5.2.0 development
  • @testing-library/react ^10.0.1 development
  • @typescript-eslint/eslint-plugin 3.8.0 development
  • @typescript-eslint/parser 3.8.0 development
  • babel-eslint ^10.1.0 development
  • babel-jest ^26.1.0 development
  • babel-loader ^8.1.0 development
  • babel-plugin-inline-react-svg ^1.1.1 development
  • babel-plugin-module-resolver ^4.0.0 development
  • babel-plugin-styled-components ^1.10.7 development
  • eslint ^7.3.1 development
  • eslint-config-airbnb ^18.1.0 development
  • eslint-config-prettier ^6.10.1 development
  • eslint-plugin-cypress 2.11.1 development
  • eslint-plugin-import ^2.20.1 development
  • eslint-plugin-jsx-a11y ^6.2.3 development
  • eslint-plugin-prettier ^3.1.2 development
  • eslint-plugin-react ^7.19.0 development
  • eslint-plugin-react-hooks ^4.0.4 development
  • file-loader ^6.0.0 development
  • html-webpack-plugin ^4.0.1 development
  • jest ^26.1.0 development
  • prettier 2.0.5 development
  • react ^16.13.1 development
  • react-dom ^16.13.1 development
  • styled-components ^4.2.0 development
  • stylelint ^13.2.1 development
  • stylelint-config-standard ^20.0.0 development
  • stylelint-config-styled-components ^0.1.1 development
  • stylelint-order ^4.0.0 development
  • stylelint-processor-styled-components ^1.10.0 development
  • webpack ^4.42.1 development
  • webpack-cli ^3.3.11 development
  • webpack-dev-server ^3.10.3 development
packages/classification-selector/package.json npm
  • @rollup/plugin-babel 5.0.4 development
  • @rollup/plugin-commonjs 13.0.0 development
  • @rollup/plugin-node-resolve 8.1.0 development
  • @storybook/react 6.0.0-beta.31 development
  • @types/lodash 4.14.155 development
  • @types/react 16.9.38 development
  • @types/react-dom 16.9.8 development
  • core-js 3.6.5 development
  • csstype 2.6.11 development
  • cypress 4.9.0 development
  • rollup 2.18.0 development
  • typescript 3.9.5 development
  • @material-ui/core 4.10.2
  • @material-ui/icons 4.9.1
  • @material-ui/lab 4.0.0-alpha.56
  • fontsource-roboto 2.2.6
  • lodash 4.17.21
packages/identifiers/package.json npm
  • typescript 3.9.5 development
packages/manhattan-plot/package.json npm
  • d3-array ^1.2.4
  • d3-scale ^2.2.2
  • lodash.throttle ^4.1.1
  • prop-types ^15.7.2
packages/markdown-loader/package.json npm
  • loader-utils ^2.0.0
  • remark ^10.0.1
  • remark-extract-frontmatter ^2.0.0
  • remark-frontmatter ^1.3.1
  • remark-html ^9.0.0
  • unist-util-visit ^1.4.0
  • yaml ^1.4.0
packages/qq-plot/package.json npm
  • d3-array ^1.2.4
  • d3-scale ^2.2.2
  • lodash.throttle ^4.1.1
  • prop-types ^15.7.2
packages/region-viewer/package.json npm
  • prop-types ^15.7.2
packages/track-genes/package.json npm
  • @gnomad/region-viewer ^1.0.0||^2.0.0||^3.0.0
  • prop-types ^15.7.2
packages/track-regions/package.json npm
  • @gnomad/region-viewer ^1.0.0||^2.0.0||^3.0.0
  • prop-types ^15.7.2
packages/track-transcripts/package.json npm
  • @gnomad/region-viewer ^1.0.0||^2.0.0||^3.0.0
  • @gnomad/track-regions ^1.0.0
  • prop-types ^15.7.2
packages/track-variants/package.json npm
  • @gnomad/region-viewer ^1.0.0||^2.0.0||^3.0.0
  • d3-scale ^2.2.2
  • prop-types ^15.7.2
packages/ui/package.json npm
  • @fortawesome/fontawesome-free ^5.8.1
  • lodash.debounce ^4.0.8
  • mousetrap ^1.6.3
  • polished ^3.2.0
  • prop-types ^15.7.2
  • react-aria-modal ^4.0.0
  • react-aria-tabpanel ^4.4.0
  • react-autocomplete ^1.8.1
  • react-popper ^1.3.3
  • react-sizeme ^2.5.2
  • react-window ^1.7.1
.github/workflows/ci.yml actions
  • actions/cache v2 composite
  • actions/checkout v2 composite
  • actions/setup-node v1 composite
scripts/package.json npm
pnpm-lock.yaml npm
  • 1774 dependencies