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Recent Releases of https://github.com/broadinstitute/drop-seq-wdl

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.8.0

What's Changed

  • Apply BQSR and generate bam metrics for Optimus outputs by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/25
  • Plot tensorqtl TPM and annotation renaming by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/26

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.7.0...DropSeqv0.8.0

- WDL
Published by kshakir 11 months ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.7.0

What's Changed

  • Annotate cis_qtls by @alecw in https://github.com/broadinstitute/Drop-seq-wdl/pull/24

New Contributors

  • @alecw made their first contribution in https://github.com/broadinstitute/Drop-seq-wdl/pull/24

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.6.3...DropSeqv0.7.0

- WDL
Published by alecw 12 months ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.6.3

What's Changed

  • Bump other dropulation tasks memory 2x to try and avoid 50002 by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/23

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.6.2...DropSeqv0.6.3

- WDL
Published by kshakir about 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.6.2

What's Changed

  • Bump detect_doublets memory 4x to try and avoid 50002 by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/22

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.6.1...DropSeqv0.6.2

- WDL
Published by kshakir about 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.6.1

What's Changed

  • Make the temporary tensorqtl variant locations unique by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/18
  • Increase the default CBRB disk size by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/21

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.6.0...DropSeqv0.6.1

- WDL
Published by kshakir about 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.6.0

What's Changed

  • Adding tensorQTL workflow by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/16

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.5.0...DropSeqv0.6.0

- WDL
Published by kshakir about 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.5.0

What's Changed

  • Begin switching over to public images by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/15

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.4.2...DropSeqv0.5.0

- WDL
Published by kshakir about 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.4.2

What's Changed

  • Fixed bug with creating gzipped outputs by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/13

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.4.1...DropSeqv0.4.2

- WDL
Published by kshakir about 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.4.1

What's Changed

  • Change gzip timestamp striping to use less disk by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/12

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.4.0...DropSeqv0.4.1

- WDL
Published by kshakir about 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.4.0

What's Changed

  • When converting H5 to MTX or MTX.gz then add extra disk space by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/8
  • Default CBRB param estimation based on other options by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/9
  • Ignore missing CBRB HTML reports by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/10
  • Half default CBRB learning rate by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/11

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.3.2...DropSeqv0.4.0

- WDL
Published by kshakir over 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.3.2

What's Changed

  • Reduce default CBRB learning rate by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/7

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.3.1...DropSeqv0.3.2

- WDL
Published by kshakir over 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.3.1

What's Changed

  • enable forceTwoClusterSolution for CBRB parameter estimation by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/5
  • CBRB workflow patches by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/6

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.3.0...DropSeqv0.3.1

- WDL
Published by kshakir over 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.3.0

What's Changed

  • Fixed name of renamed workflow by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/3

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.2.0...DropSeqv0.3.0

- WDL
Published by kshakir over 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.2.0

What's Changed

  • Multiple updates: by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/2

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/compare/DropSeqv0.1.0...DropSeqv0.2.0

- WDL
Published by kshakir over 1 year ago

https://github.com/broadinstitute/drop-seq-wdl - DropSeq_v0.1.0

What's Changed

  • Initial version: by @kshakir in https://github.com/broadinstitute/Drop-seq-wdl/pull/1

Full Changelog: https://github.com/broadinstitute/Drop-seq-wdl/commits/DropSeq_v0.0.1

- WDL
Published by kshakir over 1 year ago