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il-4_project

All code written under the scope of the PhD thesis "Unraveling the role of il-4 in the maturation and function of the cerebellar circuit: Implications for neuropsychiatric diseases" by Pedro Ferreira

https://github.com/ncblcnc/il-4_project

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 7 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

All code written under the scope of the PhD thesis "Unraveling the role of il-4 in the maturation and function of the cerebellar circuit: Implications for neuropsychiatric diseases" by Pedro Ferreira

Basic Info
  • Host: GitHub
  • Owner: ncblcnc
  • License: agpl-3.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 292 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 1
Created about 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Citation

README.md

DOI

DOI:10.1016/j.neuron.2023.09.031

IL-4 Project Codebase

This repository contains all the code used under the scope of the PhD Thesis:

"Unraveling the role of il-4 in the maturation and function of the cerebellar circuit: Implications for neuropsychiatric diseases" by Pedro Ferreira

All code was written by Pedro Ferreira (Work in Progress)

Repository includes the following:

  • Bonsai Workflow - Motor behavior quantification
  • Bonsai Workflow - Time spent in ROI quantification
  • Python - Running Wheel data extraction and quantification - GUI
  • Python - dLight data quantification (multiple) (TBD)
  • ImageJ Macro - Convex hull from Imaris Surface
  • ImageJ Macro - Count cells with Find Maxima
  • R - General Additive Mixed Models for Sholl Analysis
  • R - Binomial Generalized Linear Mixed Model
  • R - Linear Mixed Models

[!NOTE] If you use or adapt any of this work, please cite both this repository and:

Guedes and Ferreira et al., 2023, Neuron 111, 3435–3449, November 1, 2023 https://doi.org/10.1016/j.neuron.2023.09.031

Owner

  • Login: ncblcnc
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.1.0
message: "If you use this code, please cite it as below."
authors:
- family-names: Ferreira
  given-names: Pedro
  orcid: "https://orcid.org/0000-0002-9571-0384"
title: "Unraveling the role of IL-4 in the maturation and function of the cerebellar circuit: Implications for neuropsychiatric diseases"
url: "https://github.com/ncblcnc/IL-4_project"
version: NCBLv0.0.1
date-released: 2024-08-13

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