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Open Source Science

https://github.com/broadinstitute/cds-ensemble

https://github.com/broadinstitute/cds-ensemble

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary
Last synced: 11 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • Language: Python
  • Default Branch: master
  • Size: 192 KB
Statistics
  • Stars: 2
  • Watchers: 16
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created almost 6 years ago · Last pushed about 2 years ago
Metadata Files
Readme

README.md

cds-ensemble

cds-ensemble is a command line tool for running model fitting portion of the ensemble prediction pipeline.

Installation

Use the package manager pip to install cds-ensemble.

bash pip install cds-ensemble

Usage

See detailed documentation here

cds-ensemble prepare-y --input targets.csv --output prepared_targets cds-ensemble prepare-x --model-config model-config.yaml --output prepared_features --targets prepared_targets.ftr --feature-info feature-info.csv --output-related related cds-ensemble fit-model --x prepared_features.ftr --y prepared_targets.ftr --model-config model-config.yaml --model MatchRelated --target-range 0 10 --related-table related.ftr

Contributing

Setup

Run the setup script. This installs pip requirements and creates pre-commit hooks.

bash sh setup.sh

License

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
Last Year

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 60
  • Total Committers: 2
  • Avg Commits per committer: 30.0
  • Development Distribution Score (DDS): 0.017
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Yejia Chen y****a@b****g 59
Nayeem Aquib 1****4 1
Committer Domains (Top 20 + Academic)
broadinstitute.org: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
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Dependencies

.github/workflows/python-package.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
dev_requirements.txt pypi
  • pre-commit ==2.7.1 development
  • pytest ==6.0.2 development
requirements.txt pypi
  • click ==7.1.2
  • pandas ==1.1.2
  • pyarrow ==3.0.0
  • pyyaml ==5.3.1
  • scikit-learn ==0.23.2
  • typing-extensions ==3.7.4.3
setup.py pypi
  • click >=7,<8
  • pandas >=1,<2
  • pyarrow >=3,<4
  • pyyaml >=5,<6
  • scikit-learn >=0,<1
  • typing-extensions >=3,<4