https://github.com/broadinstitute/gnomad-deployments

kustomizations for current gnomad project kubernetes deployments

https://github.com/broadinstitute/gnomad-deployments

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    2 of 4 committers (50.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (7.4%) to scientific vocabulary

Keywords from Contributors

genomics gnomad
Last synced: 10 months ago · JSON representation

Repository

kustomizations for current gnomad project kubernetes deployments

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • Language: Makefile
  • Default Branch: main
  • Size: 108 KB
Statistics
  • Stars: 1
  • Watchers: 9
  • Forks: 1
  • Open Issues: 5
  • Releases: 0
Created over 2 years ago · Last pushed 12 months ago
Metadata Files
Readme

README.md

gnomAD Deployment definitions

This repository houses the deployment definitions for the gnomAD project. Production deployments are generally managed by ArgoCD, and are applied to a GKE cluster either automatically, or via the ArgoCD web UI, based on what is appropriate for that particular deployment.

Kustomize

For the most part, these deployments are defined with Kustomize. Note that kustomize can be used in two ways:

  1. As a standalone tool, where you run kustomize build to render the final configuration, and then pipe that to kubectl apply -f - to apply it to the cluster.
  2. As part of kubectl, with the -k flag.

We typically assume the use of the standalone tool, since the one bundled with kubectl is sometimes out of date, and doesn't support all the features we are using. You may find that the kubectl version works fine, and it's OK to use it in those cases. However, if you run into things that don't work, try using the standalone tool.

The standalone tool can be installed on macOS with brew install kustomize, or on other platforms by downloading the binary from the releases page.

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

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  • Issues event: 1
  • Watch event: 1
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  • Pull request review event: 3
  • Pull request event: 12
  • Fork event: 1
  • Create event: 9
Last Year
  • Issues event: 1
  • Watch event: 1
  • Push event: 59
  • Pull request review event: 3
  • Pull request event: 12
  • Fork event: 1
  • Create event: 9

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 113
  • Total Committers: 4
  • Avg Commits per committer: 28.25
  • Development Distribution Score (DDS): 0.301
Past Year
  • Commits: 101
  • Committers: 4
  • Avg Commits per committer: 25.25
  • Development Distribution Score (DDS): 0.317
Top Committers
Name Email Commits
sjahl 6****l 79
TGG Automation t****n@b****g 29
Phil Darnowsky p****s@b****g 4
Riley Grant g****h@g****m 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 1
  • Total pull requests: 16
  • Average time to close issues: N/A
  • Average time to close pull requests: 4 days
  • Total issue authors: 1
  • Total pull request authors: 3
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 12
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 days
  • Issue authors: 1
  • Pull request authors: 3
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • nadeaujoshua (1)
Pull Request Authors
  • sjahl (12)
  • phildarnowsky-broad (6)
  • rileyhgrant (4)
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