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Open Source Science

https://github.com/broadinstitute/cdot_track_compounds_run

https://github.com/broadinstitute/cdot_track_compounds_run

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • License: mit
  • Language: Python
  • Default Branch: master
  • Size: 24.4 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 6 years ago · Last pushed over 5 years ago
Metadata Files
Readme Changelog License

README.md

Track Compounds Run

Build Status

Project to be use to track where compounds are made and when they were tested.

Requirements

If using Mac OS 10.15 and greater:

If you haven't installed xcode, homebrew, or pipenv please follow steps 1-4.

  1. Install xcode command line tools
    command line: xcode-select --install

  2. Install hombrew
    command line: ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

  3. Install Python > 3.6 using Miniconda command line' brew cask install miniconda

  4. Install pipenv
    command line: brew install pipenv

Usage

Note: This app requires a Google API Key as well as a Broad Internal network connection.

Create and activate a virtual environment using Pipenv command line: pipenv install --dev

Invoke CLI: python -m make_updated_tracking_sheet

Options: python -m make_updated_tracking_sheet -f will enable reading from a .csv file rather than from Google Sheets directly. Google sheets will not be updated but an Exel file containig compounds without data will still be save to the destop..

Google Sheet tab "Compounds Received but not Tested" will be updated.

An Excel File with updated dates that the compounds were run, a pivot table, and the above Google Sheet tab will be saved to the desktop.

License

This project is licensed under the terms of the MIT License

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
Last Year

Committers

Last synced: 12 months ago

All Time
  • Total Commits: 39
  • Total Committers: 1
  • Avg Commits per committer: 39.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Ben Fulroth f****b@i****m 39

Issues and Pull Requests

Last synced: 12 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
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Dependencies

Pipfile pypi
  • pytest * develop
  • pytest-cov * develop
  • click *
  • cryptography *
  • cx-oracle *
  • google-api-python-client *
  • google-auth-httplib2 *
  • google-auth-oauthlib *
  • gspread *
  • numpy *
  • oauth2client ==3.*
  • openpyxl *
  • pandas *
  • pytest *
  • pytest-cov *
  • python-dotenv *
  • setuptools-scm *
  • sqlalchemy *
Pipfile.lock pypi
  • attrs ==20.1.0 develop
  • coverage ==5.2.1 develop
  • importlib-metadata ==1.7.0 develop
  • iniconfig ==1.0.1 develop
  • more-itertools ==8.5.0 develop
  • packaging ==20.4 develop
  • pluggy ==0.13.1 develop
  • py ==1.9.0 develop
  • pyparsing ==2.4.7 develop
  • pytest ==6.0.1 develop
  • pytest-cov ==2.10.1 develop
  • six ==1.15.0 develop
  • toml ==0.10.1 develop
  • zipp ==3.1.0 develop
  • attrs ==20.1.0
  • cachetools ==4.1.1
  • certifi ==2020.6.20
  • cffi ==1.14.2
  • chardet ==3.0.4
  • click ==7.1.2
  • coverage ==5.2.1
  • cryptography ==3.1
  • cx-oracle ==8.0.0
  • et-xmlfile ==1.0.1
  • google-api-core ==1.22.1
  • google-api-python-client ==1.11.0
  • google-auth ==1.21.0
  • google-auth-httplib2 ==0.0.4
  • google-auth-oauthlib ==0.4.1
  • googleapis-common-protos ==1.52.0
  • gspread ==3.6.0
  • httplib2 ==0.18.1
  • idna ==2.10
  • importlib-metadata ==1.7.0
  • iniconfig ==1.0.1
  • jdcal ==1.4.1
  • more-itertools ==8.5.0
  • numpy ==1.19.1
  • oauth2client ==3.0.0
  • oauthlib ==3.1.0
  • openpyxl ==3.0.5
  • packaging ==20.4
  • pandas ==1.1.1
  • pluggy ==0.13.1
  • protobuf ==3.13.0
  • py ==1.9.0
  • pyasn1 ==0.4.8
  • pyasn1-modules ==0.2.8
  • pycparser ==2.20
  • pyparsing ==2.4.7
  • pytest ==6.0.1
  • pytest-cov ==2.10.1
  • python-dateutil ==2.8.1
  • python-dotenv ==0.14.0
  • pytz ==2020.1
  • requests ==2.24.0
  • requests-oauthlib ==1.3.0
  • rsa ==4.6
  • setuptools-scm ==4.1.2
  • six ==1.15.0
  • sqlalchemy ==1.3.19
  • toml ==0.10.1
  • uritemplate ==3.0.1
  • urllib3 ==1.25.10
  • zipp ==3.1.0