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Open Source Science

https://github.com/broadinstitute/gatk-evaluation

https://github.com/broadinstitute/gatk-evaluation

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.4%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • Language: Python
  • Default Branch: master
  • Size: 61.4 MB
Statistics
  • Stars: 1
  • Watchers: 34
  • Forks: 0
  • Open Issues: 10
  • Releases: 0
Created over 8 years ago · Last pushed about 4 years ago
Metadata Files
Readme

README.md

gatk-evaluation

Docker Repo

us.gcr.io/broad-dsde-methods/gatk-evaluation/

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 15
  • Total pull requests: 25
  • Average time to close issues: 10 days
  • Average time to close pull requests: 3 days
  • Total issue authors: 2
  • Total pull request authors: 4
  • Average comments per issue: 0.87
  • Average comments per pull request: 0.52
  • Merged pull requests: 23
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • asmirnov239 (9)
  • LeeTL1220 (1)
Pull Request Authors
  • samuelklee (6)
  • asmirnov239 (4)
  • LeeTL1220 (2)
  • MartonKN (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

CNV/gCNV/codex/docker/Dockerfile docker
  • bioconductor/release_base2 latest build
CNV/gCNV/plotting_gcnv_eval/Dockerfile docker
  • continuumio/miniconda3 latest build
CNV/gCNV/sfari/docker/Dockerfile docker
  • bioconductor/release_base2 latest build
CNV/gCNV/xhmm/docker/Dockerfile docker
  • gcc 5.1.0 build
CNV/somatic/crsp_and_wgs/docker/Dockerfile docker
  • ubuntu 16.04 build
pipeline-optimizer/Dockerfile docker
  • ubuntu 16.04 build
CNV/gCNV/plotting_gcnv_eval/environment.yml pypi
  • biopython ==1.70
  • intervaltree ==2.1.0
  • matplotlib ==2.1.0
  • numpy ==1.13.3
  • pandas ==0.21.0
  • pybedtools ==0.8.0
  • pyvcf ==0.6.8
  • scipy ==1.0.0