https://github.com/broadinstitute/viral-classify
viral-ngs: taxonomic identification, classification, and filtering steps
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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✓Committers with academic emails
9 of 20 committers (45.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Keywords from Contributors
carpentries
bioinformatics
Last synced: 11 months ago
·
JSON representation
Repository
viral-ngs: taxonomic identification, classification, and filtering steps
Basic Info
- Host: GitHub
- Owner: broadinstitute
- License: other
- Language: Python
- Default Branch: master
- Size: 60.3 MB
Statistics
- Stars: 2
- Watchers: 11
- Forks: 0
- Open Issues: 5
- Releases: 0
Created almost 7 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
License
README.md
viral-classify
A set of scripts and tools for taxonomic identification, classification, and filtration from NGS data, with a focus on viral applications.
More detailed command line documentation can be found at readthedocs
Developer documentation can be found at here
Higher level pipelines and workflows for viral-ngs can be found in the pipelines github repo.
Owner
- Name: Broad Institute
- Login: broadinstitute
- Kind: organization
- Location: Cambridge, MA
- Website: http://www.broadinstitute.org/
- Twitter: broadinstitute
- Repositories: 1,083
- Profile: https://github.com/broadinstitute
Broad Institute of MIT and Harvard
GitHub Events
Total
- Watch event: 1
- Pull request event: 1
- Create event: 1
Last Year
- Watch event: 1
- Pull request event: 1
- Create event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Danny Park | d****k@b****g | 1,295 |
| Christopher Tomkins-Tinch | t****c@b****g | 777 |
| Irwin Jungreis | i****r@c****u | 159 |
| Simon Ye | m****l@y****m | 135 |
| Ilya Shlyakhter | i****l@a****u | 52 |
| Hayden Metsky | h****y@g****m | 41 |
| Hanna Mendes Levitin | h****n@g****m | 19 |
| golu099 | f****e@g****m | 15 |
| Mike Lin | m****n@m****t | 9 |
| Flavia | n****e@b****g | 4 |
| Aaron Lin | 0****l@g****m | 3 |
| biocyberman | b****n@g****m | 3 |
| Flavia Negrete | f****e@F****l | 3 |
| Christopher Tomkins-Tinch | t****c@z****g | 2 |
| Christopher Tomkins-Tinch | t****c@p****g | 2 |
| pvanheus | p****h@w****a | 1 |
| Katrin Leinweber | 9****r | 1 |
| Christopher Tomkins-Tinch | t****c@h****g | 1 |
| Brett T. Hannigan | b****n@d****m | 1 |
| Lydia Andreyevna Krasilnikova | l****s@m****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 11
- Total pull requests: 69
- Average time to close issues: 3 months
- Average time to close pull requests: about 1 month
- Total issue authors: 3
- Total pull request authors: 4
- Average comments per issue: 0.82
- Average comments per pull request: 0.41
- Merged pull requests: 60
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 8
- Average time to close issues: N/A
- Average time to close pull requests: 2 days
- Issue authors: 0
- Pull request authors: 2
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- dpark01 (5)
- golu099 (2)
- tomkinsc (1)
Pull Request Authors
- tomkinsc (23)
- dpark01 (16)
- golu099 (9)
- yesimon (1)