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Open Source Science

https://github.com/broadinstitute/gatk-tool-wdls

Autogenerated WDLs for GATK Tools

https://github.com/broadinstitute/gatk-tool-wdls

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    2 of 2 committers (100.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.2%) to scientific vocabulary

Keywords from Contributors

genome
Last synced: 10 months ago · JSON representation

Repository

Autogenerated WDLs for GATK Tools

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • License: bsd-3-clause
  • Language: WDL
  • Default Branch: master
  • Homepage:
  • Size: 295 KB
Statistics
  • Stars: 4
  • Watchers: 28
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Created over 5 years ago · Last pushed over 1 year ago
Metadata Files
Readme License

README.md

License (3-Clause BSD)

gatk-tool-wdls

Autogenerated WDLs for GATK Tools

This repository contains auto-generated WDL wrappers for individual tools in the Genome Analysis Toolkit (GATK). The intention is that these WDLs can be imported as tasks into larger workflows consisting of multiple tools run as a pipeline.

Each set of WDLs published here is tagged with the GATK release version that they were generated from. You should match the version of the WDLs with the version of GATK that you are running.

A .dockstore.yml file is also provided for integration with Dockstore

Note: Only those GATK tools that have been annotated for WDL generation will have WDLs in this repository. Over time, we will annotate additional GATK tools for WDL generation, and they will show up here with each new GATK release.

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

GitHub Events

Total
  • Push event: 2
  • Create event: 1
Last Year
  • Push event: 2
  • Create event: 1

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 19
  • Total Committers: 2
  • Avg Commits per committer: 9.5
  • Development Distribution Score (DDS): 0.211
Past Year
  • Commits: 2
  • Committers: 1
  • Avg Commits per committer: 2.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
David Roazen d****n@b****g 15
Louis Bergelson l****b@b****g 4
Committer Domains (Top 20 + Academic)
broadinstitute.org: 2

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 3
  • Total pull requests: 0
  • Average time to close issues: 17 minutes
  • Average time to close pull requests: N/A
  • Total issue authors: 3
  • Total pull request authors: 0
  • Average comments per issue: 0.67
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • adthrasher (1)
  • rickymagner (1)
  • yfarjoun (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels