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gptools

Gaussian processes on graphs and lattices in Stan and pytorch.

https://github.com/tillahoffmann/gptools

Science Score: 44.0%

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  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
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    Academic publication links
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.7%) to scientific vocabulary

Keywords

fft gaussian-processes graph pytorch stan
Last synced: 6 months ago · JSON representation ·

Repository

Gaussian processes on graphs and lattices in Stan and pytorch.

Basic Info
  • Host: GitHub
  • Owner: tillahoffmann
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 645 KB
Statistics
  • Stars: 3
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
fft gaussian-processes graph pytorch stan
Created over 3 years ago · Last pushed about 3 years ago
Metadata Files
Readme License Citation

README.md

gptools: performant Gaussian processes in Stan and pytorch CI

This collection of packages provides tools for performant inference of Gaussian processes.

Owner

  • Name: Till Hoffmann
  • Login: tillahoffmann
  • Kind: user
  • Location: Boston, MA
  • Company: Harvard T.H. Chan School of Public Health

Building network models at @HarvardChanSchool with a focus on open and reproducible science. Formerly @imperial, @spotify.

Citation (CITATION.cff) 

# yaml-language-server: $schema=https://citation-file-format.github.io/1.2.0/schema.json
cff-version: 1.2.0
message: If you use this software, please cite it as below.
title: Scalable Gaussian Process Inference with Stan
url: "https://github.com/onnela-lab/gptools"
authors:
- family-names: Hoffmann
  given-names: Till
  orcid: https://orcid.org/0000-0003-4403-0722
- family-names: Onnela
  given-names: Jukka-Pekka
  orcid: https://orcid.org/0000-0001-6613-8668
preferred-citation:
  type: article
  authors:
  - family-names: Hoffmann
    given-names: Till
    orcid: https://orcid.org/0000-0003-4403-0722
  - family-names: Onnela
    given-names: Jukka-Pekka
    orcid: https://orcid.org/0000-0001-6613-8668
  doi: 10.48550/arXiv.2301.08836
  journal: arXiv
  start: "2301.08836"
  title: Scalable Gaussian Process Inference with Stan
  year: 2023

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: 12 months ago

All Time
  • Total issues: 9
  • Total pull requests: 66
  • Average time to close issues: 20 days
  • Average time to close pull requests: 2 days
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.78
  • Average comments per pull request: 0.05
  • Merged pull requests: 60
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • tillahoffmann (9)
Pull Request Authors
  • tillahoffmann (65)
Top Labels
Issue Labels
enhancement (3) stan (3) util (2) wontfix (2)
Pull Request Labels
stan (6) enhancement (2) util (2) documentation (1) bug (1) torch (1)

Dependencies

.github/workflows/main.yml actions
  • actions/cache v3 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • pypa/gh-action-pypi-publish release/v1 composite
dev_requirements.in pypi
  • jupytext * development
  • pip-tools * development
dev_requirements.txt pypi
  • 164 dependencies
shared_requirements.in pypi
  • docutils <0.18
  • nbclient <=0.5.13
stan/setup.py pypi
  • Required *
  • cmdstanpy >=1.0.7
  • gptools-util *
  • https *
  • numpy *
stan/test_requirements.txt pypi
  • 157 dependencies
torch/setup.py pypi
  • gptools-util *
  • numpy *
  • torch *
torch/test_requirements.txt pypi
  • 153 dependencies
util/setup.py pypi
  • numpy *
util/test_requirements.txt pypi
  • 152 dependencies