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https://github.com/broadinstitute/brown_lab_warp

Subroutines of WARP for germline exome calling

https://github.com/broadinstitute/brown_lab_warp

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
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    Found codemeta.json file
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    .zenodo.json file
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    Scientific vocabulary similarity
    Low similarity (7.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Subroutines of WARP for germline exome calling

Basic Info
  • Host: GitHub
  • Owner: broadinstitute
  • License: bsd-3-clause
  • Language: wdl
  • Default Branch: develop
  • Size: 41.6 MB
Statistics
  • Stars: 2
  • Watchers: 6
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 5 years ago · Last pushed over 5 years ago
Metadata Files
Readme Changelog License

README.md

Announcing a new site for WARP documentation!

WARP documentation has moved! Read more about our pipelines and repository on the new WARP documentation site!

WARP summary

WARP (WDL Analysis Research Pipelines) repository is a collection of cloud-optimized pipelines for processing biological data from the Broad Institute Data Sciences Platform and collaborators.

WARP pipelines provide robust, standardized data analysis for the Broad Institute Genomics Platform and large consortia like the Human Cell Atlas and the BRAIN Initiative. You can count on WARP for rigorously scientifically validated, high scale, reproducible and open source pipelines. The contents of this repository are open source and released under the BSD 3-Clause license.

Build Status

Owner

  • Name: Broad Institute
  • Login: broadinstitute
  • Kind: organization
  • Location: Cambridge, MA

Broad Institute of MIT and Harvard

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Dependencies

.github/workflows/doc_publish.yml actions
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.github/workflows/doc_test.yml actions
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.github/workflows/wdl_check.yml actions
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beta-pipelines/broad/somatic/single_sample/wgs/gdc_genome/biobambam2/Dockerfile docker
  • ubuntu bionic-20180426 build
beta-pipelines/broad/somatic/single_sample/wgs/gdc_genome/bwa/Dockerfile docker
  • ubuntu bionic-20180426 build
dockers/broad/VerifyBamId/Dockerfile docker
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dockers/cemba/bismark/Dockerfile docker
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dockers/cemba/bisulfite-references/Dockerfile docker
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dockers/cemba/bowtie2/Dockerfile docker
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dockers/cemba/cutadapt/Dockerfile docker
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dockers/cemba/picard/Dockerfile docker
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dockers/cemba/samtools/Dockerfile docker
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dockers/skylab/HCA_post_processing/Dockerfile docker
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dockers/skylab/dropseq_tools/Dockerfile docker
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dockers/skylab/dropseq_tools_v2/Dockerfile docker
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dockers/skylab/emptydrops/Dockerfile docker
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dockers/skylab/hisat2/Dockerfile docker
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dockers/skylab/loom-output/Dockerfile docker
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dockers/skylab/optimus-test-matrix/Dockerfile docker
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dockers/skylab/picard/Dockerfile docker
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dockers/skylab/samtools/Dockerfile docker
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dockers/skylab/snap-breakout/Dockerfile docker
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dockers/skylab/snaptools/Dockerfile docker
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dockers/skylab/star/Dockerfile docker
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dockers/skylab/subread/Dockerfile docker
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dockers/skylab/subset-fastq-dataset/Dockerfile docker
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dockers/skylab/umi-tools/Dockerfile docker
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pipelines/skylab/optimus/scripts/Dockerfile docker
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website/docs/package.json npm
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website/docs/yarn.lock npm
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dockers/skylab/HCA_post_processing/requirements.txt pypi
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dockers/skylab/loom-output/requirements.txt pypi
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