https://github.com/brody-lab/depasquale-elife-2024
Data and analysis notebooks for DePasquale et. al eLife 2024
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
-
✓Committers with academic emails
2 of 2 committers (100.0%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (7.2%) to scientific vocabulary
Repository
Data and analysis notebooks for DePasquale et. al eLife 2024
Basic Info
- Host: GitHub
- Owner: Brody-Lab
- License: apache-2.0
- Language: Jupyter Notebook
- Default Branch: main
- Homepage: https://doi.org/10.7554/eLife.84955
- Size: 195 MB
Statistics
- Stars: 1
- Watchers: 4
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
DePasquale et al eLife 2024
Data and analysis for DePasquale et. al eLife 2024.
After you clone the repository to your local machine, further steps are needed to run these notebooks. Several Julia libraries are necessary to run the analyses in each notebook. To instantiate a julia project enviorment for these notebooks and scripts, execute the following
julia --project=. -e 'using Pkg; Pkg.instantiate()'
This should download and add all the dependent libraries listed in Project.toml.
After the project has been instantiated, be sure to activate it before running any notebooks. Sometimes julia knows the current directoy is a enviorment and will activate it automatically. Otherwise, navigate to the parent directory and run using Pkg; Pkg.activate(".").
Note: PulseInputDDM.jl is a custom codebase for fitting latent variable models and is required for all analyses.
Two important notes:
- Be sure that you are using verion 0.4.4 of
PulseInputDDM, as versions after that were significantly updated and this code will be out of date with it. - Julia's random number generator changed after Julia 1.5, and so a small number of the notebooks here were qualitivatley (but not quantitatively) impacted by that changed.
Owner
- Name: Brody-Lab
- Login: Brody-Lab
- Kind: organization
- Repositories: 12
- Profile: https://github.com/Brody-Lab
GitHub Events
Total
Last Year
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Brian DePasquale | b****q@b****u | 17 |
| Brian DePasquale | d****e@p****u | 11 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 0
- Total pull requests: 3
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 3
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- briandepasquale (6)