https://github.com/brody-lab/boydmeredith_training_report
GUI to monitor performance with training on PBups pipeline
Science Score: 13.0%
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Low similarity (7.2%) to scientific vocabulary
Repository
GUI to monitor performance with training on PBups pipeline
Basic Info
- Host: GitHub
- Owner: Brody-Lab
- Language: MATLAB
- Default Branch: master
- Size: 73.2 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Training Report
This code provides some helpful functions for reporting training progress in rats training in the Brody lab.
Configuration
You will need to modify train_report_paths.m to point to the
relevant directories containing rat data and where you'd like to save data.
On a Mac with cup mounted, you probably want
tr.brodydir = '/Volumes/brody', whereas on the cluster you
probably want tr.brodydir = '/jukebox/brody'.
You can specify a tr.parentsavedir to be whereever you want. It will
automatically put a figures and data folder there for saving out
figures and new compilations of data like the stages.mat files that
contain all the training stages a rat experiences.
Looking at the full training history
get_training_stages and plot_training_stages can be used to
compile a list of all of the protocols and protcol stages a rat encounters
during training. It is also possible to grab settings of interest from
the settings file as well.
You can specify these as an optset in train_report_config.m.
You'll see there's already an example for the wait time protcol called
wt and a minimal example for pbups.
To view the training history of rat B136, you can run
matlab
rat = 'B139';
start_date = '' % leaving this empty will get all sessions
res = get_training_stages(rat, start_date, 'overwrite', 1, 'config_optset',
'pbups');
plot_training_stages(res);
This will produce an image like this one
Owner
- Name: Brody-Lab
- Login: Brody-Lab
- Kind: organization
- Repositories: 12
- Profile: https://github.com/Brody-Lab
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