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Open Source Science

https://github.com/brsynth/genes2doe

https://github.com/brsynth/genes2doe

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 1 committers (100.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.0%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: brsynth
  • License: mit
  • Language: Python
  • Default Branch: master
  • Size: 14.6 KB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 4 years ago · Last pushed over 4 years ago
Metadata Files
Readme Changelog License

README.md

genes2doe - Extract genes for OptDoE

Install

From Conda

```sh [sudo] conda install -c conda-forge genes2doe

```

Use

CLI

python -m parts2doe tests/data/input/lycopene.xml GeneParts.csv

As a Python module

```python from parts2doe import extract_genes

genes = extractgenes( sbmlfile='tests/data/input/lycopene.xml' ) genes.to_csv('GeneParts.csv', index=False) ```

Tests

pytest is required and installable by: conda install -c conda-forge pytest

Please follow instructions below to run tests: python -m pytest For further tests and development tools, a CI toolkit is provided in https://github.com/breakthewall/cicd-toolkit.

Authors

  • Joan Hérisson

Licence

genes2doe is released under the MIT licence. See the LICENCE file for details.

Owner

  • Name: BioRetroSynth
  • Login: brsynth
  • Kind: organization

Our group is interested in synthetic biology and systems metabolic engineering in whole-cell and cell-free systems.

GitHub Events

Total
Last Year

Committers

Last synced: about 3 years ago

All Time
  • Total Commits: 10
  • Total Committers: 1
  • Avg Commits per committer: 10.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Joan Hérisson j****n@u****r 10
Committer Domains (Top 20 + Academic)
univ-evry.fr: 1

Issues and Pull Requests

Last synced: almost 3 years ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 1
conda-forge.org: genes2doe
  • Versions: 1
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 34.0%
Dependent packages count: 51.2%
Average: 52.2%
Forks count: 61.1%
Stargazers count: 62.4%
Last synced: 11 months ago

Dependencies

environment.yaml conda
  • pandas
  • rptools