Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (5.7%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: freh-g
- License: agpl-3.0
- Language: Jupyter Notebook
- Default Branch: main
- Size: 198 MB
Statistics
- Stars: 7
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Genopyc is a Python library for investigating the effect of genetic variants on the downstream pathways. It allows to perform various tasks such as retrieve the functional elements neighbouring genomic coordinates, investigating linkage disequilibrium (LD), annotate variants, retrieving genes affected by non coding variants and perform and visualize functional enrichment analysis.
To learn more on an application of genopyc library to investigate variants related to Intervertebral Disc Degeneration refer to the tutorial.
The documentation is available at readthedocs.
Owner
- Name: Francesco Gualdi
- Login: freh-g
- Kind: user
- Location: Barcelona
- Company: Institut Hospital del Mar d'investigacions mediques (IMIM)
- Repositories: 0
- Profile: https://github.com/freh-g
Bsc in biology at UNIFE, Msc in medical biotechnology at UNIVR. Currently working in medical bioinformatics group at IMIM, Barcelona doing my PhD in Biomedicine
GitHub Events
Total
- Watch event: 2
- Delete event: 2
- Push event: 4
Last Year
- Watch event: 2
- Delete event: 2
- Push event: 4
Packages
- Total packages: 1
-
Total downloads:
- pypi 1,018 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 111
- Total maintainers: 1
pypi.org: genopyc
- Documentation: https://genopyc.readthedocs.io/
- License: GPL
-
Latest release: 2.7.7
published 9 months ago
Rankings
Maintainers (1)
Dependencies
- biomapy *
- dash *
- dash_cytoscape *
- gprofiler_official *
- igraph *
- networkx *
- numpy *
- pandas *
- requests *
- biomapy *
- dash *
- dash_cytoscape *
- gprofiler_official *
- igraph *
- networkx *
- numpy *
- pandas *
- requests *
- genopyc *
- matplotlib *
- seaborn *