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morphapi

A Python package to download neuronal morphologies

https://github.com/brainglobe/morphapi

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    4 of 9 committers (44.4%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.1%) to scientific vocabulary

Keywords from Contributors

brain neuroscience atlases microscopy registration visualisation
Last synced: 6 months ago · JSON representation ·

Repository

A Python package to download neuronal morphologies

Basic Info
Statistics
  • Stars: 17
  • Watchers: 3
  • Forks: 7
  • Open Issues: 3
  • Releases: 16
Created almost 6 years ago · Last pushed 7 months ago
Metadata Files
Readme License Citation

README.md

morphapi

Overview

Morphapi is a lightweight python package for downloading neurons morphological reconstructions from publicly available datasets.

Please see the documentation.

Seeking help or contributing

We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.

Owner

  • Name: BrainGlobe
  • Login: brainglobe
  • Kind: organization
  • Location: London/Munich

Open python tools for morphological analyses in systems neuroscience

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: morphapi
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Federico
    family-names: Claudi
  - given-names: BrainGlobe
    family-names: Developers
    email: hello@brainglobe.info
repository-code: 'https://github.com/brainglobe/morphapi'
url: 'https://brainglobe.info'
abstract: >-
  A lightweight python package to download neuronal
  morphologies.
license: MIT
date-released: '2023-11-16'
year: 2023

GitHub Events

Total
  • Create event: 16
  • Release event: 1
  • Issues event: 2
  • Delete event: 11
  • Issue comment event: 16
  • Push event: 18
  • Pull request review event: 13
  • Pull request event: 27
  • Fork event: 1
Last Year
  • Create event: 16
  • Release event: 1
  • Issues event: 2
  • Delete event: 11
  • Issue comment event: 16
  • Push event: 18
  • Pull request review event: 13
  • Pull request event: 27
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 85
  • Total Committers: 9
  • Avg Commits per committer: 9.444
  • Development Distribution Score (DDS): 0.318
Past Year
  • Commits: 11
  • Committers: 3
  • Avg Commits per committer: 3.667
  • Development Distribution Score (DDS): 0.455
Top Committers
Name Email Commits
FedeClaudi f****i@p****m 58
Adrien Berchet a****t@e****h 14
pre-commit-ci[bot] 6****] 3
Adam Tyson c****e@a****m 3
Luigi Petrucco l****o@g****m 2
arnaudon a****n@e****h 2
Adam Tyson a****n@u****k 1
Adrien Berchet a****t@g****m 1
kanari l****i@e****h 1
Committer Domains (Top 20 + Academic)
epfl.ch: 3 ucl.ac.uk: 1 adamltyson.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 23
  • Total pull requests: 80
  • Average time to close issues: 7 months
  • Average time to close pull requests: 2 days
  • Total issue authors: 9
  • Total pull request authors: 10
  • Average comments per issue: 1.17
  • Average comments per pull request: 0.93
  • Merged pull requests: 77
  • Bot issues: 0
  • Bot pull requests: 27
Past Year
  • Issues: 1
  • Pull requests: 27
  • Average time to close issues: 3 days
  • Average time to close pull requests: about 15 hours
  • Issue authors: 1
  • Pull request authors: 4
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.74
  • Merged pull requests: 25
  • Bot issues: 0
  • Bot pull requests: 16
View more stats
Top Authors
Issue Authors
  • adamltyson (10)
  • FedeClaudi (4)
  • asanin-epfl (1)
  • alessandrofelder (1)
  • IgorTatarnikov (1)
  • adrien-berchet (1)
  • Antorithms (1)
  • vigji (1)
  • lidakanari (1)
Pull Request Authors
  • pre-commit-ci[bot] (37)
  • adamltyson (21)
  • IgorTatarnikov (20)
  • adrien-berchet (18)
  • willGraham01 (6)
  • lochhh (1)
  • lidakanari (1)
  • vigji (1)
  • alessandrofelder (1)
  • arnaudon (1)
Top Labels
Issue Labels
enhancement (8) bug (4)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 1,635 last-month
  • Total dependent packages: 3
  • Total dependent repositories: 1
  • Total versions: 42
  • Total maintainers: 2
pypi.org: morphapi

A lightweight python package to download neuronal morphologies

  • Versions: 42
  • Dependent Packages: 3
  • Dependent Repositories: 1
  • Downloads: 1,635 Last month
Rankings
Dependent packages count: 2.2%
Downloads: 7.7%
Average: 12.4%
Forks count: 14.3%
Stargazers count: 15.6%
Dependent repos count: 22.3%
Maintainers (2)
vigji fede123
Last synced: 7 months ago

Dependencies

.github/workflows/build_and_publish.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • pypa/gh-action-pypi-publish release/v1 composite
.github/workflows/run-tests.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite