fr.inria.gforge.spirals

Open-science code of the program repair tool described in "Dynamic Patch Generation for Null Pointer Exceptions Using Metaprogramming" (SANER'17)

https://github.com/spoonlabs/npefix

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 4 DOI reference(s) in README
  • Academic publication links
  • Committers with academic emails
    3 of 10 committers (30.0%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (11.8%) to scientific vocabulary

Keywords

open-science program-repair

Keywords from Contributors

pypi mesh interactive hacking
Last synced: 6 months ago · JSON representation ·

Repository

Open-science code of the program repair tool described in "Dynamic Patch Generation for Null Pointer Exceptions Using Metaprogramming" (SANER'17)

Basic Info
Statistics
  • Stars: 14
  • Watchers: 13
  • Forks: 9
  • Open Issues: 11
  • Releases: 4
Topics
open-science program-repair
Created over 10 years ago · Last pushed over 1 year ago
Metadata Files
Readme Citation

README.md

NPEFix

NPEFix is a system that automatically generates patches for NullPointerException, aka automatic bug fixing for NPE. This code is research code, released under the GPL licence, developed at Inria Lille.

If you use this code, please cite:

Thomas Durieux, Benoit Cornu, Lionel Seinturier and Martin Monperrus, "Dynamic Patch Generation for Null Pointer Exceptions Using Metaprogramming", In IEEE International Conference on Software Analysis, Evolution and Reengineering, 2017, doi:10.1109/SANER.2017.7884635.

bibtex @inproceedings{durieuxNpeFix, title = {{Dynamic Patch Generation for Null Pointer Exceptions Using Metaprogramming}}, author = {Durieux, Thomas and Cornu, Benoit and Seinturier, Lionel and Monperrus, Martin}, url = {https://hal.archives-ouvertes.fr/hal-01419861/document}, booktitle = {{IEEE International Conference on Software Analysis, Evolution and Reengineering}}, doi = {10.1109/SANER.2017.7884635}, year = {2017}, }

Command line

As of August 2024, NpeFix expects Java 17:

$ export JAVA_HOME=/usr/lib/jvm/java-17-openjdk-amd64/ $± java --version openjdk 11.0.24 2024-07-16 OpenJDK Runtime Environment (build 11.0.24+8-post-Ubuntu-1ubuntu324.04.1) OpenJDK 64-Bit Server VM (build 11.0.24+8-post-Ubuntu-1ubuntu324.04.1, mixed mode, sharing)

Install: git clone https://github.com/Spirals-Team/npefix/ cd npefix mvn install

Run: java -jar target/npefix.jar \\ --test failing_test --iteration 100 --complianceLevel 8 --workingdirectory . --source path_source:path_test --classpath a.jar:b.jar; --repairStrategy <fully qualified name of a repair strategy>

Reproduce the Scientific Evaluation

To reproduce the evaluation from the paper: 1. Gets the NPE Dataset: https://github.com/Spirals-Team/npe-dataset 2. Installs each bug on your system, in order to download the dependencies 3. Configures the location of the dataset in src/main/resources/config.ini 4. Creates the jar with all dependencies: mvn clean compile assembly:single 5. Execute java -jar target/npefix-0.3-jar-with-dependencies.jar (see the execution usage below)

Execution usage

```Bash java -jar target/npefix-0.2-jar-with-dependencies.jar (-p|--project) [(-m|--mode) ] [(-x|--working) ] [(-k|--m2) <~/.m2>] [(-e|--epsilon) <0.2>] [(-s|--seed) ] [(-l|--laps) ] [(-t|--timeout) ]

(-p|--project) The name of the buggy program to execute (e.g. collection-360, math-1117, ...).

[(-m|--mode) ] The execution mode: * normal: Executes n times (the option --laps) the program and use the Epsilon Greedy algorithm to select the decision. * exploration: Explores all possible decision sequences with a limit of n laps (defined by --laps)

[(-x|--working) ] The path to the evaluation working directory.

[(-k|--m2) <~/.m2>] The m2 folder. (default: ~/.m2)

[(-e|--epsilon) <0.2>] The Epsilon-Greedy epsilon (the probability to use the exploration vs exploitation). (default: 0.2)

[(-s|--seed) ] The seed of the random generator.

[(-l|--laps) ] Defines the number of laps. (default: 100)

[(-t|--timeout) ] Defines the timeout in second of the each test execution. (default: 5) ```

Execution output

js { "executions": [ /* all laps */ { "result": { "error": "<the exception>", "type": "<the oracle type>", "success": true }, /* all decisions points */ "locations": [{ "sourceEnd": 12234, "executionCount": 0, "line": 352, "class": "org.apache.commons.collections.iterators.CollatingIterator", "sourceStart": 12193 }], /* the runned test */ "test": { "name": "testNullComparator", "class": "org.apache.commons.collections.iterators.TestCollatingIterator" }, /* all decision made during the laps */ "decisions": [{ /* the location of the laps */ "location": { "sourceEnd": 12234, "line": 352, "class": "org.apache.commons.collections.iterators.CollatingIterator", "sourceStart": 12193 }, /* the value used by the decision */ "value": { "variableName": "leastObject", "value": "leastObject", "type": "int" }, /* the value of the epsilon */ "epsilon": 0.4, // the name of the strategy "strategy": "Strat4 VAR", "used": true, /* the decision type (new, best, random) */ "decisionType": "new" }], "startDate": 1453918743999, "endDate": 1453918744165, "metadata": {"seed": 10} }, ... ], "searchSpace": [ /* all detected decisions */ { "location": { "sourceEnd": 12234, "line": 352, "class": "org.apache.commons.collections.iterators.CollatingIterator", "sourceStart": 12193 }, "value": { "value": "1", "type": "int" }, "epsilon": 0, "strategy": "Strat4 NEW", "used": false, "decisionType": "random" }, ... ], "date": "Wed Jan 27 19:19:37 CET 2016" }

Other usages

Maven-repair is a Maven plugin for bug-fixing, see https://github.com/Spirals-Team/repairnator/tree/master/maven-repair

Owner

  • Name: SpoonLabs
  • Login: SpoonLabs
  • Kind: organization

The laboratory for Java source code analysis and transformation using Spoon

Citation (CITATION.cff)

cff-version: 1.2.0
preferred-citation:
  title: "Dynamic Patch Generation for Null Pointer Exceptions Using Metaprogramming"
  doi: "10.1109/SANER.2017.7884635"
  year: "2017"
  type: conference-paper
  conference: "IEEE International Conference on Software Analysis, Evolution and Reengineering"
  authors:
    - family-names: Durieux
      given-names: Thomas
    - family-names: Cornu
      given-names: Benoit
    - family-names: Seinturier
      given-names: Lionel
    - family-names: Monperrus
      given-names: Martin

GitHub Events

Total
  • Issues event: 2
  • Issue comment event: 12
  • Push event: 4
  • Fork event: 1
Last Year
  • Issues event: 2
  • Issue comment event: 12
  • Push event: 4
  • Fork event: 1

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 195
  • Total Committers: 10
  • Avg Commits per committer: 19.5
  • Development Distribution Score (DDS): 0.159
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
tdurieux d****s@h****m 164
Martin Monperrus m****s@g****g 10
Martin Monperrus m****s 8
Benjamin DANGLOT b****t@i****r 4
Simon Urli s****i@i****r 3
Simon Urli s****i@g****m 2
André Silva a****e@h****m 1
bcornu b****u@i****r 1
dependabot[bot] 4****] 1
Benjamin Tellström 3****m 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 8 months ago

All Time
  • Total issues: 17
  • Total pull requests: 12
  • Average time to close issues: 8 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 8
  • Total pull request authors: 6
  • Average comments per issue: 2.65
  • Average comments per pull request: 3.5
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 1
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 12.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • monperrus (6)
  • andre15silva (3)
  • jose (3)
  • surli (1)
  • DehengYang (1)
  • Peanu11 (1)
  • tdurieux (1)
  • Kaka727 (1)
Pull Request Authors
  • danglotb (4)
  • surli (3)
  • btellstrom (2)
  • andre15silva (1)
  • dependabot[bot] (1)
  • ghost (1)
Top Labels
Issue Labels
good-first-issue (1)
Pull Request Labels
dependencies (1)

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 1
  • Total dependent repositories: 4
  • Total versions: 2
repo1.maven.org: fr.inria.gforge.spirals:npefix

Automatic repair of NPE

  • Versions: 2
  • Dependent Packages: 1
  • Dependent Repositories: 4
Rankings
Dependent repos count: 12.0%
Average: 31.2%
Dependent packages count: 32.7%
Forks count: 37.9%
Stargazers count: 42.2%
Last synced: 6 months ago

Dependencies

pom.xml maven
  • org.eclipse.core:org.eclipse.core.resources 3.6.0.v20100526-0737 compile
  • org.eclipse.core:org.eclipse.core.runtime 3.6.0.v20100505 compile
  • com.cloudbees:diff4j 1.2
  • fr.inria.gforge.spoon:spoon-core 10.2.0-SNAPSHOT
  • junit:junit 4.13.1
  • log4j:log4j 1.2.17
  • org.apache.maven:maven-model 3.5.0
  • org.glassfish.tyrus.bundles:tyrus-standalone-client 1.13.1
  • org.hamcrest:hamcrest-core 1.3
  • org.json:json 20160212
  • org.slf4j:slf4j-simple 1.7.6