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missing-data-tracker

Web app that tracks missing data

https://github.com/amp-scz/missing-data-tracker

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.2%) to scientific vocabulary
Last synced: 9 months ago · JSON representation ·

Repository

Web app that tracks missing data

Basic Info
  • Host: GitHub
  • Owner: AMP-SCZ
  • License: apache-2.0
  • Language: Python
  • Default Branch: master
  • Size: 321 KB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 0
  • Open Issues: 2
  • Releases: 1
Created almost 2 years ago · Last pushed 9 months ago
Metadata Files
Readme License Citation

docs/README.md

missing-data-tracker

DOI Python Platform

A web application for tracking AMP-SCZ missing data

Tashrif Billah and Sylvain Bouix

Table of Contents

Description

https://predict2.bwh.harvard.edu/missing/ is a web application for tracking AMP-SCZ data e.g. arrival, protocol deviation, and QC ratings. It has site-specific and network-specific logins allowing decentralized access to AMP-SCZ data.

The application's backend is designed intelligently to allow front-end data manipulation such as filtering, sorting, selective rendering of columns. Moreover, users can filter for data types: MRI, EEG, CNB, and A/V/L and timepoints: baseline, month2, month6, etc:

Each page of the web application shows 50 subjects with option to change page. This pagination facilitates easier navigation over hundreds of subjects. Finally, it has a download feature to save the filtered data as a spreadsheet. The spreadsheet could be sent to stakeholder site so that they can correct any anomalies that are present.

Nginx config

To access the web app at https://NAME.harvard.edu/missing , add this snippet to /etc/nginx/nginx.conf:

location /missing/ { proxy_pass http://localhost:8052; }

ERIS to VM rsync

cd /data/predict1/data_from_nda/ rsync -aR combined-AMPSCZ-data_*-day1to1.csv rc-predict-dev.partners.org:/data/predict1/data_from_nda/ rsync -aR Pronet_status/combined-*csv rc-predict-dev.partners.org:/data/predict1/data_from_nda/ rsync -aR Prescient_status/combined-*csv rc-predict-dev.partners.org:/data/predict1/data_from_nda/

Owner

  • Name: AMP SCZ
  • Login: AMP-SCZ
  • Kind: organization

Accelerating Medicines Partnership - Schizophrenia

Citation (CITATION.CFF) 

cff-version: 1.2.0
message: "Please cite as below."
authors:
- family-names: "Billah"
  given-names: "Tashrif"
- family-names: "Bouix"
  given-names: "Sylvain"
title: "Plotly/Dash based web application for tracking missing data of AMP-SCZ project"
version: 1.0
doi: 10.5281/zenodo.6326487
date-released: 2024-08-01
url: "https://github.com/AMP-SCZ/missing-data-tracker/"

GitHub Events

Total
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 6
  • Pull request event: 3
  • Create event: 1
Last Year
  • Watch event: 1
  • Issue comment event: 1
  • Push event: 6
  • Pull request event: 3
  • Create event: 1

Dependencies

requirements.txt pypi
  • dash ==2.17.1
  • pandas ==2.2.2