Recent Releases of solosis
solosis - 0.4.2
What's Changed
- Align LSF options by @davehorsfall in https://github.com/haniffalab/solosis/pull/154
- Prepare 0.4.2 by @davehorsfall in https://github.com/haniffalab/solosis/pull/157
Full Changelog: https://github.com/haniffalab/solosis/compare/v0.4.1...v0.4.2
- Jupyter Notebook
Published by davehorsfall 11 months ago
solosis - 0.4.1
What's Changed
- Add validation for cellranger-count success by @louisegrimble in https://github.com/haniffalab/solosis/pull/145
- Bump jinja2 from 3.1.5 to 3.1.6 in /envs by @dependabot in https://github.com/haniffalab/solosis/pull/151
- 0.4.1 by @davehorsfall in https://github.com/haniffalab/solosis/pull/153
New Contributors
- @dependabot made their first contribution in https://github.com/haniffalab/solosis/pull/151
Full Changelog: https://github.com/haniffalab/solosis/compare/v0.4.0...v0.4.1
- Jupyter Notebook
Published by davehorsfall 11 months ago
solosis - 0.4.0
What's Changed
- Feature/arc refactor dh by @davehorsfall in https://github.com/haniffalab/solosis/pull/83
- Command descriptions updated #72 by @louisegrimble in https://github.com/haniffalab/solosis/pull/75
- Bugfix/update sphinx documentation by @louisegrimble in https://github.com/haniffalab/solosis/pull/79
- cellranger-arc refactor, pytest coverage and python logic added #57 by @louisegrimble in https://github.com/haniffalab/solosis/pull/74
- Feature/disk-usage command add irods archive/team298 information by @louisegrimble in https://github.com/haniffalab/solosis/pull/95
- Feature/imeta report new command by @louisegrimble in https://github.com/haniffalab/solosis/pull/93
- Bugfix/update sphinx updated development strategy #16 by @louisegrimble in https://github.com/haniffalab/solosis/pull/89
- Feature/adding lustre/nfs quota in disk-usage command by @louisegrimble in https://github.com/haniffalab/solosis/pull/92
- Feat/sc qc by @davehorsfall in https://github.com/haniffalab/solosis/pull/98
- Farm by @vjbaskar in https://github.com/haniffalab/solosis/pull/56
- Aligned sc-rna scanpy to the new refactored code base by @vjbaskar in https://github.com/haniffalab/solosis/pull/100
- Feat/cleanup by @davehorsfall in https://github.com/haniffalab/solosis/pull/104
- correct path to ref in .sh script #110 by @louisegrimble in https://github.com/haniffalab/solosis/pull/111
- Feature/cellbender add new flags by @louisegrimble in https://github.com/haniffalab/solosis/pull/122
- Feature/add docs links to solosis-cli output by @louisegrimble in https://github.com/haniffalab/solosis/pull/124
- Feature/imeta report overall report by @louisegrimble in https://github.com/haniffalab/solosis/pull/125
- Provide development instructions by @davehorsfall in https://github.com/haniffalab/solosis/pull/126
- Validate nf-irods-to-fastq metadata by @davehorsfall in https://github.com/haniffalab/solosis/pull/129
- [Feature] Add GPU support for LSF jobs by @davehorsfall in https://github.com/haniffalab/solosis/pull/136
- fixing build-docs deploy-docs PR checks by @louisegrimble in https://github.com/haniffalab/solosis/pull/144
- create iget-cellranger logfile including potential path to outputs by @louisegrimble in https://github.com/haniffalab/solosis/pull/130
- Appended timestamp to cellbender output as identifier by @louisegrimble in https://github.com/haniffalab/solosis/pull/133
- Created cellranger vdj command by @louisegrimble in https://github.com/haniffalab/solosis/pull/134
- Added Script bin internal variable by @louisegrimble in https://github.com/haniffalab/solosis/pull/135
- Remove history commands from history log by @louisegrimble in https://github.com/haniffalab/solosis/pull/149
- fix pytests and add some new pytests by @louisegrimble in https://github.com/haniffalab/solosis/pull/148
- Updating bash script paths for iget-fastqs and cellranger-vdj and farm.py by @louisegrimble in https://github.com/haniffalab/solosis/pull/150
- Prep release 0.4.0 by @davehorsfall in https://github.com/haniffalab/solosis/pull/105
Full Changelog: https://github.com/haniffalab/solosis/compare/v0.3.0...v0.4.0
- Jupyter Notebook
Published by davehorsfall 11 months ago
solosis - 0.3.0
What's Changed
- refactor work for #29 by @louisegrimble in https://github.com/haniffalab/solosis/pull/31
- Feat/parse input by @dannda in https://github.com/haniffalab/solosis/pull/11
- fixing cellranger bug #35 by @louisegrimble in https://github.com/haniffalab/solosis/pull/39
- Feat/command grouping by @davehorsfall in https://github.com/haniffalab/solosis/pull/48
- Feat errormessages by @louisegrimble in https://github.com/haniffalab/solosis/pull/45
- Feat overwrite pullcell by @louisegrimble in https://github.com/haniffalab/solosis/pull/42
- Feat disk usage by @louisegrimble in https://github.com/haniffalab/solosis/pull/46
- Bf cellranger-count by @louisegrimble in https://github.com/haniffalab/solosis/pull/50
- Feat filecount by @louisegrimble in https://github.com/haniffalab/solosis/pull/52
- Feat starsolo by @louisegrimble in https://github.com/haniffalab/solosis/pull/51
- correct array job submissions by @davehorsfall in https://github.com/haniffalab/solosis/pull/49
- Feat iget cellranger by @louisegrimble in https://github.com/haniffalab/solosis/pull/55
- Feature/issue pr templates by @davehorsfall in https://github.com/haniffalab/solosis/pull/61
- Bugfix/iget fastqs iinit - Adding check if logged into irods by @louisegrimble in https://github.com/haniffalab/solosis/pull/60
- Prep 0.3.0 by @louisegrimble in https://github.com/haniffalab/solosis/pull/27
- Bugfix/iget fastqs iinit #59 by @louisegrimble in https://github.com/haniffalab/solosis/pull/64
- updating path to submit.sh by @louisegrimble in https://github.com/haniffalab/solosis/pull/58
- Increasing LSF memory in starsolo submit.sh #40 by @louisegrimble in https://github.com/haniffalab/solosis/pull/63
- Fixing Cellranger-count pytest to pass (issue #65) by @louisegrimble in https://github.com/haniffalab/solosis/pull/68
- Fixing lustre values and user email address in filecount command #47 by @louisegrimble in https://github.com/haniffalab/solosis/pull/67
- [Feat] iget-cellranger command issues #53 and #69 by @louisegrimble in https://github.com/haniffalab/solosis/pull/70
- Prep 0.3.0 release by @davehorsfall in https://github.com/haniffalab/solosis/pull/73
Full Changelog: https://github.com/haniffalab/solosis/compare/v0.2.3...v0.3.0
- Jupyter Notebook
Published by davehorsfall about 1 year ago
solosis - v0.2.3
What's Changed
- release 0.2.3 by @davehorsfall in https://github.com/haniffalab/solosis/pull/22
- release 0.2.3 by @davehorsfall in https://github.com/haniffalab/solosis/pull/23
Full Changelog: https://github.com/haniffalab/solosis/compare/v0.2.2...v0.2.3
- Jupyter Notebook
Published by davehorsfall over 1 year ago
solosis - 0.2.0
What's Changed
- Merge dev by @davehorsfall in https://github.com/haniffalab/solosis/pull/13
- Merge dev by @davehorsfall in https://github.com/haniffalab/solosis/pull/14
- Merge Dev by @louisegrimble in https://github.com/haniffalab/solosis/pull/18
- prep 0.2.0 by @davehorsfall in https://github.com/haniffalab/solosis/pull/19
New Contributors
- @davehorsfall made their first contribution in https://github.com/haniffalab/solosis/pull/13
Full Changelog: https://github.com/haniffalab/solosis/compare/v0.1.0...v0.2.0
- Jupyter Notebook
Published by davehorsfall over 1 year ago
solosis - 0.1.0
What's Changed
- update paths to /software by @dannda in https://github.com/haniffalab/solosis/pull/1
- Lg dev merge to main branch by @louisegrimble in https://github.com/haniffalab/solosis/pull/2
- add pre-commit by @dannda in https://github.com/haniffalab/solosis/pull/3
- Added history command by @vjbaskar in https://github.com/haniffalab/solosis/pull/4
- Irods fastq by @vjbaskar in https://github.com/haniffalab/solosis/pull/5
- Added scanpy by @vjbaskar in https://github.com/haniffalab/solosis/pull/7
- Added full scanpy support by @vjbaskar in https://github.com/haniffalab/solosis/pull/8
- Lg dev- big changes to cellranger, starsolo and cellbender by @louisegrimble in https://github.com/haniffalab/solosis/pull/6
- Lg dev adding the alginment..submit_cellranger script again by @louisegrimble in https://github.com/haniffalab/solosis/pull/9
- Adata merge by @vjbaskar in https://github.com/haniffalab/solosis/pull/10
New Contributors
- @dannda made their first contribution in https://github.com/haniffalab/solosis/pull/1
- @louisegrimble made their first contribution in https://github.com/haniffalab/solosis/pull/2
- @vjbaskar made their first contribution in https://github.com/haniffalab/solosis/pull/4
Full Changelog: https://github.com/haniffalab/solosis/commits/v0.1.0
- Jupyter Notebook
Published by davehorsfall over 1 year ago
solosis - v0.1.0
What's Changed
- update paths to /software by @dannda in https://github.com/haniffalab/solosis/pull/1
- Lg dev merge to main branch by @louisegrimble in https://github.com/haniffalab/solosis/pull/2
- add pre-commit by @dannda in https://github.com/haniffalab/solosis/pull/3
- Added history command by @vjbaskar in https://github.com/haniffalab/solosis/pull/4
- Irods fastq by @vjbaskar in https://github.com/haniffalab/solosis/pull/5
- Added scanpy by @vjbaskar in https://github.com/haniffalab/solosis/pull/7
- Added full scanpy support by @vjbaskar in https://github.com/haniffalab/solosis/pull/8
- Lg dev- big changes to cellranger, starsolo and cellbender by @louisegrimble in https://github.com/haniffalab/solosis/pull/6
- Lg dev adding the alginment..submit_cellranger script again by @louisegrimble in https://github.com/haniffalab/solosis/pull/9
- Adata merge by @vjbaskar in https://github.com/haniffalab/solosis/pull/10
New Contributors
- @dannda made their first contribution in https://github.com/haniffalab/solosis/pull/1
- @louisegrimble made their first contribution in https://github.com/haniffalab/solosis/pull/2
- @vjbaskar made their first contribution in https://github.com/haniffalab/solosis/pull/4
Full Changelog: https://github.com/haniffalab/solosis/commits/v0.1.0
- Jupyter Notebook
Published by davehorsfall over 1 year ago