swasianeolithicfoundercrops

Data and code for Arranz-Otaegui & Roe (2023), "Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia'

https://github.com/joeroe/swasianeolithicfoundercrops

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Data and code for Arranz-Otaegui & Roe (2023), "Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia'

README.Rmd

---
output: github_document
---



```{r setup, echo = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "README-"
)
```

# The "Neolithic Founder Crops" in Southwest Asia: Research Compendium

[![DOI](https://zenodo.org/badge/351475245.svg)](https://zenodo.org/badge/latestdoi/351475245)
[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/joeroe/SWAsiaNeolithicFounderCrops/main?urlpath=rstudio)

This repository contains the data and code for our paper:

> Arranz-Otaegui, Amaia, and Roe, Joe (2023). Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia. *Vegetation History & Archaeobotany*. 

## Contents

The `analysis` directory contains:

  - [:file\_folder: SI1.Rmd](/analysis/SI1.Rmd): R Markdown source 
    code for the supplement to our manuscript describing the quantitative 
    analysis. It includes code to reproduce the figures and tables generated by 
    the analysis. 
    - [:file\_folder: SI1.html](/analysis/SI1.html): rendered version 
      of the supplement in HTML format.
    - [:file\_folder: SI1.pdf](/analysis/SI1.pdf): rendered version 
      of the supplement in PDF format.
  - [:file\_folder: data](/analysis/data): Data used in the analysis.
    - [:file\_folder: raw_data](/analysis/data/raw_data): Data from other sources  
      see manuscript for attribution.
    - [:file\_folder: derived_data](/analysis/data/derived_data): Collated and 
      processed dataset used for our analysis.
  - [:file\_folder: figures](/analysis/figures): Individual figures and tables
    generated in the analysis.

Additional R functions supporting the analysis are contained in the `R` directory.

## Run the compendium locally

This research compendium has been developed using the statistical programming
language R. To work with the compendium, you will need
installed on your computer the [R software](https://cloud.r-project.org/)
itself and optionally [RStudio Desktop](https://rstudio.com/products/rstudio/download/).

You can download the compendium as a zip from from this URL:
[master.zip](/archive/master.zip). After unzipping:
- open the `.Rproj` file in RStudio
- run `devtools::install()` to ensure you have the packages this analysis depends on (also listed in the
[DESCRIPTION](/DESCRIPTION) file).
- finally, open `analysis/analysis.Rmd` and 'knit' or run `rmarkdown::render("analysis/analysis.Rmd")` in the R console to produce the `analysis.html` and `analysis.pdf`.

## Citation

> Arranz-Otaegui, Amaia, and Roe, Joe (2023). Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia. *Vegetation History & Archaeobotany*. 

In addition to our paper above, you can cite this compendium specifically as:

> Roe, Joe, & Arranz Otaegui, Amaia. (2023). The "Neolithic Founder Crops" in Southwest Asia: Research Compendium. *Zenodo*. https://doi.org/10.5281/zenodo.5911218>

## Licenses

**Text and figures:** [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)

**Code:** See the [DESCRIPTION](DESCRIPTION) file

**Data:** [CC-0](http://creativecommons.org/publicdomain/zero/1.0/) attribution requested in reuse

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