<code>svZeroDSolver</code> - JOSS Release

This is the release for the Journal of Open Source Software manuscript.

What's Changed

• Specify GCC and clang-format versions in Github runners by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/148
• Catch solver error by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/152
• Update minimum CMake version to 3.5 and set policy version by @ncdorn in https://github.com/SimVascular/svZeroDSolver/pull/161
• #171 windows builds installers by @zasexton in https://github.com/SimVascular/svZeroDSolver/pull/172
• Update license by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/178

Full Changelog: https://github.com/SimVascular/svZeroDSolver/compare/v2.0...v3.0

Scientific Software - Peer-reviewed - C++
Published by menon-karthik 10 months ago

<code>svZeroDSolver</code> - JOSS Release

This is the release for the Journal of Open Source Software manuscript.

What's Changed

• Update JOSS paper branch with first set of reviewers' comments by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/149
• Update JOSS paper references and license by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/163
• Minor comments from JOSS review by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/170
• Update paper.md: minor English edits for the JOSS publication by @philipcardiff in https://github.com/SimVascular/svZeroDSolver/pull/173

Full Changelog: https://github.com/SimVascular/svZeroDSolver/compare/v2.0...v2.1

Scientific Software - Peer-reviewed - C++
Published by menon-karthik 10 months ago

<code>svZeroDSolver</code> - JOSS Release

This is the release for the Journal of Open Source Software manuscript.

What's Changed

• Update JOSS paper branch with first set of reviewers' comments by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/149
• Update JOSS paper references and license by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/163
• Minor comments from JOSS review by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/170
• Update paper.md: minor English edits for the JOSS publication by @philipcardiff in https://github.com/SimVascular/svZeroDSolver/pull/173

Full Changelog: https://github.com/SimVascular/svZeroDSolver/compare/v2.0...v2.1

Scientific Software - Peer-reviewed - C++
Published by menon-karthik 10 months ago

<code>svZeroDSolver</code> - v2.0

Summary of major release notes:

• Moved to the SimVascular repository and renamed to svZeroDSolver
• Refactor - removed namespaces, changed from header-only library
• Fixed linearization and time-stepping
• Simplified block generation
• C++ interface for calling svZeroDSolver from other codes
• New blocks - blood vessel and resistive junctions, tanh valve, cardiac chamber
• New applications - svZeroDCalibrator, svZeroDVisualization, svZeroDGUI.
• Improved testing and functionality to simulate until convergence
• Moved documentation to SimVascular website

What's Changed

• Add blood vessel junction by @richterjakob in https://github.com/SimVascular/svZeroDSolver/pull/18
• Interface for calling svZeroDPlus from other codes by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/20
• fixed some debug message typos by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/23
• Fix memory leak in Integrator by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/26
• Clean up configreader by @richterjakob in https://github.com/SimVascular/svZeroDSolver/pull/27
• Add Levenberg-Marquardt model calibration by @richterjakob in https://github.com/SimVascular/svZeroDSolver/pull/31
• Test cases for shared library interface by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/33
• Remove python by @richterjakob in https://github.com/SimVascular/svZeroDSolver/pull/34
• Coverage by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/42
• Refactoring .hpp -> .h, .cpp and remove class templates by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/45
• Remove namespaces 48 by @ktbolt in https://github.com/SimVascular/svZeroDSolver/pull/49
• Add installer by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/51
• Code format 55 by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/56
• Clean up residual and linearization by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/57
• Upgrade to Doxygen 1.9.6 by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/61
• Specify pybind Python version by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/64
• Change folder to ZeroDSolver by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/62
• Revert to no MathJax by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/68
• Clean up code 59 by @ktbolt in https://github.com/SimVascular/svZeroDSolver/pull/67
• Fixed doxygen warnings and make the build fail for undocumented code by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/72
• New generalized alpha formulation by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/74
• Sort assembly of ClosedLoopHeartPulmonary by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/75
• Simplify block generation by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/78
• Add hyperbolic tangent valve by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/79
• Test mean values in pulsatile tests by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/84
• More input checks by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/83
• Cardiac chamber model by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/87
• Update README.md links by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/90
• Rename svZeroDPlus to svZeroDSolver by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/91
• Fix memory issue and add functionality to python interface by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/93
• fix names by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/97
• Add Codecov by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/98
• Fix interfacing with svSolver/svFSI by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/102
• Simulate an open-loop 0D model until it converges by @JonathanPham in https://github.com/SimVascular/svZeroDSolver/pull/109
• Add token and use v4 by @mrp089 in https://github.com/SimVascular/svZeroDSolver/pull/111
• Upgrading macOS in Github Actions by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/116
• Update documentation with new features and instructions for new blocks by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/113
• Compare test cases to reference solutions by @ncdorn in https://github.com/SimVascular/svZeroDSolver/pull/112
• improve code coverage and parametrization of solver tests by @ncdorn in https://github.com/SimVascular/svZeroDSolver/pull/118
• Add names of internal variables to the documentation by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/124
• Adding svZeroDVisualization Tool by @emilinmathew in https://github.com/SimVascular/svZeroDSolver/pull/123
• svZeroDGUI Tool by @emilinmathew in https://github.com/SimVascular/svZeroDSolver/pull/122
• Update docs for svZeroDVisualization and svZeroDGUI by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/129
• Fix OpenLoopCoronary equations by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/125
• update docs to reflect gcc sherlock version by @ncdorn in https://github.com/SimVascular/svZeroDSolver/pull/130
• Fix svZeroDVisualization tests by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/134
• Modify CMake commands to install into svZeroDSolver. by @ktbolt in https://github.com/SimVascular/svZeroDSolver/pull/131
• Remove redundant docs after moving to SimVascular website by @menon-karthik in https://github.com/SimVascular/svZeroDSolver/pull/137

New Contributors

• @menon-karthik made their first contribution in https://github.com/SimVascular/svZeroDSolver/pull/20
• @mrp089 made their first contribution in https://github.com/SimVascular/svZeroDSolver/pull/42
• @ktbolt made their first contribution in https://github.com/SimVascular/svZeroDSolver/pull/49
• @JonathanPham made their first contribution in https://github.com/SimVascular/svZeroDSolver/pull/109
• @ncdorn made their first contribution in https://github.com/SimVascular/svZeroDSolver/pull/112
• @emilinmathew made their first contribution in https://github.com/SimVascular/svZeroDSolver/pull/123

Full Changelog: https://github.com/SimVascular/svZeroDSolver/compare/v1.1...v2.0

Scientific Software - Peer-reviewed - C++
Published by menon-karthik over 1 year ago

<code>svZeroDSolver</code> - v1.1

Scientific Software - Peer-reviewed - C++
Published by richterjakob over 3 years ago

<code>svZeroDSolver</code> - Initial release

Initial release of svZeroDPlus

Scientific Software - Peer-reviewed - C++
Published by richterjakob over 3 years ago