MMM - Version 1.1.6

Updated Catch test framework to version 2.13.10

Scientific Software - Peer-reviewed - C++
Published by wtraylor over 2 years ago

MMM - Version 1.1.4

FIXED: - Error initial_fatmass > maximum_fatmass #35 - Nitrogen mass was not considered in Fauna::ForageBase::merge_base().

Scientific Software - Peer-reviewed - C++
Published by wtraylor over 3 years ago

MMM - Version 1.1.3

Added

• Option to reset date in Fauna::World - e.g. to start simulation from the beginning in the next location/gridcell

Changed

• Move quickstart guide from Doxygen docs to README.md [#52]
• Update PlantUML from 1.2019.09 to 1.2021.15

Fixed

• Restore library interface for backward compatibility: Fauna::World::World() and Fauna::World::is_activated()
• Exception if started without HFTs
• Now HFT table files won’t be created if there are no HFTs defined.
• Too low digestibility values in output, due to wrong weights in aggregation.
• CI doxygen generation failing with error "sh: 1: /usr/sbin/dot: not found". dot is now disabled.

Scientific Software - Peer-reviewed - C++
Published by wtraylor about 4 years ago

MMM - Version 1.1.2

Added

• demo_results.Rmd now only tries to plot those files that are available [#39]

Fixed

• Allow simulation.one_hft_per_habitat only for herbivore_type = "Cohort"
• Issue that only one HFT got created and outputted if simulation.one_hft_per_habitat = true

Scientific Software - Peer-reviewed - C++
Published by wtraylor over 4 years ago

MMM - Version 1.1.1

FIXED - Implement simulation.one_hft_per_habitat option

Scientific Software - Peer-reviewed - C++
Published by wtraylor over 4 years ago

MMM - Version 1.1.0

Added

• Code coverage badge with codecov.io
• Software metadata in codemeta format
• Add parameter sanity checks: mortality must not exceed reproduction; expenditure must not exceed intake [#45]
• New text table output: individual_density and body_fat [#43]
• The parameter hft.breeding_season.start can now take a month name (alternative to the Julian day).

Changed

• Rename output file mass_density_per_hft to mass_density [#44]

Fixed

• When configuring CMake with BUILD_DEMO_SIMULATOR=ON but BUILD_TESTING=OFF, the megafauna.toml instruction file was not copied even though run_demo needs it.
• Valgrind memory check in CI didn’t fail
• Doxygen issues with ReadTheDocs [#34] [#41] [#42]

Scientific Software - Peer-reviewed - C++
Published by wtraylor over 4 years ago

MMM - Version 1.0.3

Fixed

• Anabolism efficiency was forced to be lower than catabolism efficiency, but for no apparent reason.

Scientific Software - Peer-reviewed - C++
Published by wtraylor almost 5 years ago

MMM - Version 1.0.2

Changed

• Increase demo simulation years so we can see some population ups and downs.

Fixed

• The unit tests were broken after the last release.
• cpptoml wouldn’t compile with latest g++ (11.1.0).

Scientific Software - Peer-reviewed - C++
Published by wtraylor almost 5 years ago

MMM - Version 1.0.1

Fixed

• DigestiveLimit::FixedFraction scaled like DigestiveLimit::Allometric. Fixed fraction is now fixed and not scaling. As a result, the newborns of the example herbivore (example.toml) now die if their intake is set to a fixed fraction. Therefore the example uses the allometric limit.
• The exponent of Hft::digestion_allometric was wrong. It was set to the exponent of Hft::expenditure_basal_rate, but it must be 1 minus that because the digestion-limited intake is relative to body mass.
• If DigestiveLimit::Allometric was used, the calculated intake rates were far too low because the fraction was not multiplied with body mass.

Added

• Check code format in continuous integration.

Scientific Software - Peer-reviewed - C++
Published by wtraylor almost 5 years ago

MMM - Version 1.0.0

Added

• R scripts and LibreOffice document to reproduce figures in docs/images/. [#31]
• Minor additions to docs.
• Integration for readthedocs.org
• CI check for Git tag matching version in CMakeLists.txt

Changed

• Use sward density for Fauna::HalfMaxIntake (instead of whole-habitat grass density). This requires the vegetation model to provide correct “FPC” values (fractional area covered by grass in the habitat). [#12]
• Use modern rmarkdown package to render demo results.

Fixed

• Demo simulator has now monthly ambient air temperature.
• Replace copyrighted figure docs/images/thermoregulation.png with my own. [#32]

Removed

• Snow depth. It is not used anywhere. [#14]

Scientific Software - Peer-reviewed - C++
Published by wtraylor almost 5 years ago

MMM - Version 0.6.0

Added

• Invitation to Matrix room in README.

Fixed

• Add licensing information. [#22]

Removed

• Nitrogen retention by herbivores. The function Habitat::add_excreted_nitrogen() has been removed. The vegetation model must now handle recycling of nitrogen itself. This simplifies the code and reduces the number of parameters. Compare [#15]

Scientific Software - Peer-reviewed - C++
Published by wtraylor almost 5 years ago