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itcell

Integrative T-cell epitope prediction web service

https://github.com/salilab/itcell

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.5%) to scientific vocabulary

Keywords

prediction web-service
Last synced: 6 months ago · JSON representation ·

Repository

Integrative T-cell epitope prediction web service

Basic Info
  • Host: GitHub
  • Owner: salilab
  • License: lgpl-2.1
  • Language: Python
  • Default Branch: main
  • Homepage: https://salilab.org/itcell/
  • Size: 756 KB
Statistics
  • Stars: 3
  • Watchers: 20
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
prediction web-service
Created over 7 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Citation

README.md

Build Status codecov

This is the source code for ITCell, a web service for integrative T-cell epitope prediction. It uses the Sali lab web framework as well as the base ITCell library.

See D. Schneidman-Duhovny et al. for details.

Owner

  • Name: Sali Lab
  • Login: salilab
  • Kind: organization
  • Location: San Francisco, CA

Laboratory of Andrej Sali at the University of California San Francisco

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Schneidman-Duhovny"
  given-names: "Dina"
- family-names: "Khuri"
  given-names: "Natalia"
- family-names: "Dong"
  given-names: "Guang Qiang"
- family-names: "Winter"
  given-names: "Michael B."
- family-names: "Shifrut"
  given-names: "Eric"
- family-names: "Friedman"
  given-names: "Nir"
- family-names: "Craik"
  given-names: "Charles S."
- family-names: "Pratt"
  given-names: "Kathleen P."
- family-names: "Paz"
  given-names: "Pedro"
- family-names: "Aswad"
  given-names: "Fred"
- family-names: "Sali"
  given-names: "Andrej"
title: "ITCell"
url: "https://github.com/salilab/itcell"
preferred-citation:
  type: article
  authors:
  - family-names: "Schneidman-Duhovny"
    given-names: "Dina"
  - family-names: "Khuri"
    given-names: "Natalia"
  - family-names: "Dong"
    given-names: "Guang Qiang"
  - family-names: "Winter"
    given-names: "Michael B."
  - family-names: "Shifrut"
    given-names: "Eric"
  - family-names: "Friedman"
    given-names: "Nir"
  - family-names: "Craik"
    given-names: "Charles S."
  - family-names: "Pratt"
    given-names: "Kathleen P."
  - family-names: "Paz"
    given-names: "Pedro"
  - family-names: "Aswad"
    given-names: "Fred"
  - family-names: "Sali"
    given-names: "Andrej"
  doi: "10.1371/journal.pone.0206654"
  journal: "PLoS ONE"
  month: 11
  start: "e0206654"
  title: "Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition"
  volume: 13
  issue: 11
  year: 2018

GitHub Events

Total
  • Push event: 2
Last Year
  • Push event: 2

Dependencies

.github/workflows/build.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • codecov/codecov-action v3 composite