dockstore-pyCRISPRcleanR

Dockersised pyCRISPRcleanR for Dockstore

| Quay.io status | | ---------------------------------------------------| | |

| Master | Develop | | --------------------------------------------------- | ----------------------------------------------------- | | | |

This project wraps pyCRISPRcleanR into a Dockstore tool.

• Required inputs
• Release process
• LICENSE

Required inputs:

gRNA Counts file: tab separated file containing following fields:

sgRNA gene

sgRNA library file format with following mandatory columns:

sgRNA gene chr start end

For additional optional input parameters please run pyCRISPRcleanR --help

Release process

This project is maintained using HubFlow.

1. Make appropriate changes
2. Test cwl workflow cwl-runner pycrisprcleanr.cwl ../examples/HT-29_sample.json
3. Bump version in Dockerfile and Dockstore.cwl
4. Push changes
5. Check state on Travis
6. Generate the release (add notes to GitHub)
7. Confirm that image has been built on quay.io
8. Update the dockstore entry, see dockstore-docs

LICENCE

Copyright (c) 2018 Genome Research Ltd.

Author: Cancer Genome Project cgpit@sanger.ac.uk

This file is part of dockstore-cgp-irap.

dockstore-cgp-irap is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License along with this program. If not, see http://www.gnu.org/licenses/.

1. The usage of a range of years within a copyright statement contained within this distribution should be interpreted as being equivalent to a list of years including the first and last year specified and all consecutive years between them. For example, a copyright statement that reads ‘Copyright (c) 2018-2019’ should be interpreted as being identical to a statement that reads ‘Copyright (c) 2018, 2019’."