https://github.com/cancerit/cgpjbrowsetoolkit - 2.3.2

Fixes a couple of bugs:

1. Full fix for the --highlight option. Good for SNV and insertions, not so useful on large deletions.
2. --loc file can now be any BED format (3+ columns)

- JavaScript
Published by keiranmraine about 7 years ago

https://github.com/cancerit/cgpjbrowsetoolkit - 2.3.0 - recover from partial run

Skips over images already generated with size > 0

- JavaScript
Published by keiranmraine over 7 years ago

https://github.com/cancerit/cgpjbrowsetoolkit - 2.2.3 - URL cleaning - bug fix

Fixes bug:

Cannot read property 'ok' of null

Couple of false starts on version increment (sorry)

- JavaScript
Published by keiranmraine over 7 years ago

https://github.com/cancerit/cgpjbrowsetoolkit - 2.2.0 - auto-protect password files

Warns users and updates permissions of file passed to --passwdFile when found to allow group/others read access.

Gives warnings that this is not possible for windows.

- JavaScript
Published by keiranmraine almost 8 years ago

https://github.com/cancerit/cgpjbrowsetoolkit - 2.0.0 - Change headless tools

phantomjs has reached end of life so this release switches to a puppeteer/chrome based script.

Items of note:

• Switched to puppeteer.
  • Lost bmp support.
• Height param no longer needed.
• Utilise 'highres' option of JBrowse via --quality param.
• Added ability to extend timeout.
• Added --highlight option.
• baseUrl can be defined inline within locs bed file to change during execution.
• Can force alignments2 tracks to different display mode.
• Zoom available for small b.p. ranges
• Ability to use multiple baseUrls via bed file comments added.

- JavaScript
Published by keiranmraine over 8 years ago

https://github.com/cancerit/cgpjbrowsetoolkit - 1.1.1 - Docs and minor fixes

• Modified docs to indicate tracks backed by multibigwig function with version 0.7.0+
• Fixed typo in usage
• Added build of ReadTheDocs into travis-ci

- JavaScript
Published by keiranmraine about 9 years ago

https://github.com/cancerit/cgpjbrowsetoolkit - Executable jbrowse_rasterize.js

First major release for external consumption. Please try and let us know if there are unknown edge cases (multibigwig is known not to work).

Documentation can be found here on ReadTheDocs

- JavaScript
Published by keiranmraine about 9 years ago