https://github.com/cancerit/autocsa
LEGACY: AutoCSA (Automatic Comparative Sequence Analysis) is a mutation detection program designed to detect small mutations (1-50 bases) in capillary sequence traces. The software is capable of detecting both homozygous and heterozygous base substitutions, as well as small insertions and deletions, to a high sensitivity.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.0%) to scientific vocabulary
Keywords
Repository
LEGACY: AutoCSA (Automatic Comparative Sequence Analysis) is a mutation detection program designed to detect small mutations (1-50 bases) in capillary sequence traces. The software is capable of detecting both homozygous and heterozygous base substitutions, as well as small insertions and deletions, to a high sensitivity.
Basic Info
- Host: GitHub
- Owner: cancerit
- License: other
- Language: Java
- Default Branch: master
- Homepage: http://cancerit.github.io/AutoCSA/
- Size: 12.8 MB
Statistics
- Stars: 4
- Watchers: 6
- Forks: 2
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
AutoCSA
Java based trace file mutation detection capable of detecting both homozygous and heterozygous base substitutions, as well as small insertions and deletions, to a high sensitivity in capillary sequence traces.
Usage
For installation and run instructions see the wiki
Publication
API
click here for the AutoCSA API
LICENSE
CGP Software License
Copyright © 2006 Genome Research Ltd. Author: Cancer Genome Project, cgpit@sanger.ac.uk
This software is provided "as is", without warranty of any kind, express or implied, including but not limited to the warranties of merchantability, fitness for a particular purpose and noninfringement. In no event shall the authors or copyright holders be liable for any claim, damages or other liability, whether in an action of contract, tort or otherwise, arising from, out of or in connection with the software or the use or other dealings in the software.
This code is free software; you can redistribute it and/or modify it under the terms of the BSD License.
Any redistribution or derivation in whole or in part including any substantial portion of this code must include this copyright and permission notice.
Owner
- Name: CASM IT
- Login: cancerit
- Kind: organization
- Email: cgpit@sanger.ac.uk
- Location: Hinxton, Cambridge, UK
- Website: http://www.sanger.ac.uk/science/programmes/cancer-genetics-and-genomics
- Repositories: 89
- Profile: https://github.com/cancerit
CASM IT provide bioinformatic support for Cancer, Ageing and Somatic Mutation group at the Wellcome Sanger Institute