cardiomechanics
Finite element framework for cardiac electromechanics problems
Science Score: 44.0%
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○DOI references
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○Academic publication links
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○Scientific vocabulary similarity
Low similarity (9.9%) to scientific vocabulary
Repository
Finite element framework for cardiac electromechanics problems
Basic Info
- Host: GitHub
- Owner: KIT-IBT
- License: gpl-3.0
- Language: C++
- Default Branch: main
- Size: 33.9 MB
Statistics
- Stars: 6
- Watchers: 2
- Forks: 5
- Open Issues: 1
- Releases: 1
Metadata Files
README.md
CardioMechanics
CardioMechanics is a simulation environment designed for (but not limited to) cardiac tissue electromechanics problems. As of 09/2023, active development on this software is no longer pursued. Therefore, support is limited. Even though this repository includes a standalone cardiac electrophysiology solver, we recommend using openCARP instead if you are only interested in cardiac electrophysiology.
Features
The following features are available: * Single cell electrophysiology model test suite. * Electrophysiology simulations using Monodomain and Bidomain. * Passive and active tissue mechanics. * Support for 1-, 2-, and 4-chamber heart geometries. * Recovery of the reference configuration. * Passive parameter optimization. * Lumped parameter model of the circulatory system featuring heart valve dynamics. * Electromechanically coupled simulations. * XML-based simulation setup.
Building from Source
See docs/BUILD.md
Building Docker image
A Docker image of CardioMechanics is available in the Package Registry of this repository.
See docker/README.md for compiling the Docker image yourself.
Examples
See examples
User manual
See User's Manual & Documentation
License
This project is licensed under the GNU General Public License 3 - see the LICENSE.md file for details.
Acknowledgments
CardioMechanics builds on * CMake * PETSc * VTK * Open MPI
and the contributions of many former (PhD-)students at IBT.
Owner
- Name: KIT-IBT
- Login: KIT-IBT
- Kind: organization
- Email: publications@ibt.kit.edu
- Repositories: 6
- Profile: https://github.com/KIT-IBT
Institute of Biomedical Engineering (IBT) at Karlsruhe Institute of Technology (KIT)
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: CardioMechanics
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Tobias
family-names: Gerach
email: tobias.gerach@kit.edu
affiliation: Karlsruhe Institute of Technology (KIT)
orcid: 'https://orcid.org/0000-0002-5101-2840'
- given-names: Thomas
family-names: Fritz
affiliation: Karlsruhe Institute of Technology (KIT)
- given-names: Robin
family-names: Moss
orcid: 'https://orcid.org/0000-0001-8738-0461'
affiliation: Universitätsklinikum Freiburg
- given-names: Gunnar
family-names: Seemann
affiliation: Karlsruhe Institute of Technology (KIT)
orcid: 'https://orcid.org/0000-0001-7111-7992'
- given-names: Axel
family-names: Loewe
email: axel.loewe@kit.edu
affiliation: Karlsruhe Institute of Technology (KIT)
orcid: 'https://orcid.org/0000-0002-2487-4744'
identifiers:
- type: doi
value: 10.3390/math9111247
description: Paper documenting this software
repository-code: 'https://github.com/KIT-IBT/CardioMechanics/tree/main'
abstract: >-
CardioMechanics is a simulation environment designed for
(but not limited to) cardiac tissue electromechanics
problems. As of 09/2023, active development on this
software is no longer pursued. Therefore, support is
limited. Even though this repository includes a standalone
cardiac electrophysiology solver, we recommend using
openCARP instead if you are only interested in cardiac
electrophysiology.
keywords:
- Cardiac mechanics
- Continuum mechanics
- Cardiac electromechanics
- Cardiac electrophysiology
license: GPL-3.0-or-later
version: '1.0'
GitHub Events
Total
- Issues event: 3
- Watch event: 2
- Issue comment event: 4
- Push event: 5
- Pull request review comment event: 1
- Pull request review event: 4
- Pull request event: 7
- Fork event: 5
Last Year
- Issues event: 3
- Watch event: 2
- Issue comment event: 4
- Push event: 5
- Pull request review comment event: 1
- Pull request review event: 4
- Pull request event: 7
- Fork event: 5
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 1
- Total pull requests: 4
- Average time to close issues: about 16 hours
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 3
- Average comments per issue: 3.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 4
- Average time to close issues: about 16 hours
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 3
- Average comments per issue: 3.0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- jorge221 (1)
- MarieHouillon (1)
Pull Request Authors
- Jan-ErikDuhme (3)
- MarieHouillon (2)
- jorge221 (1)
- carolakruthoff (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v4 composite
- docker/build-push-action f2a1d5e99d037542a71f64918e516c093c6f3fc4 composite
- docker/login-action v3 composite
- docker/metadata-action 9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7 composite
- docker/setup-buildx-action v3 composite
- ${OPENMPI_PETSC_IMAGE} latest build
- ${VTK_IMAGE} latest build
- ubuntu 22.04 build