bioinformatics - v1.5.1

What's Changed

• Fix by @alexsigaras in https://github.com/eipm/bioinformatics/pull/20

Full Changelog: https://github.com/eipm/bioinformatics/compare/v1.5.0.patched20240209...v1.5.1.patched20250304

- Dockerfile
Published by alexsigaras over 1 year ago

bioinformatics - v1.5.0 - update samtools

What's Changed

• update samtools version + update actions + clean up by @katgorski in https://github.com/eipm/bioinformatics/pull/19

New Contributors

• @katgorski made their first contribution in https://github.com/eipm/bioinformatics/pull/19

Full Changelog: https://github.com/eipm/bioinformatics/compare/v1.4.0.patched20221206...v1.5.0.patched20240209

- Dockerfile
Published by katgorski over 2 years ago

bioinformatics - v1.4.0

What's Changed

• added htseq-count and tried multi-stage build by @asboner in https://github.com/eipm/bioinformatics/pull/17
• Added pigz, optimized multi-stage, updated README by @asboner in https://github.com/eipm/bioinformatics/pull/18

Full Changelog: https://github.com/eipm/bioinformatics/compare/v1.3.2.patched20201106...v.1.4.0-patched20221206

- Dockerfile
Published by asboner over 3 years ago

bioinformatics - v1.3.2 - Rename transformed BAM files

Added the option to rename the transformed BAM file with transformBAM.sh

What's Changed

• Remove combine pindel typo by @fernandezevn in https://github.com/eipm/bioinformatics/pull/14
• Update combinepindelvcfs.sh by @fernandezevn in https://github.com/eipm/bioinformatics/pull/15
• adding the option to specify the full output name by @asboner in https://github.com/eipm/bioinformatics/pull/16

New Contributors

• @fernandezevn made their first contribution in https://github.com/eipm/bioinformatics/pull/14

Full Changelog: https://github.com/eipm/bioinformatics/compare/v1.3.1.patched20201106...v1.3.2.patched20201106

- Dockerfile
Published by asboner over 5 years ago

bioinformatics - v1.3.1 - Security Remediation

What's Changed

• Updated Dockerfile and readme by @alexsigaras in https://github.com/eipm/bioinformatics/pull/12

New Contributors

• @alexsigaras made their first contribution in https://github.com/eipm/bioinformatics/pull/12

Full Changelog: https://github.com/eipm/bioinformatics/compare/1.3.0...v1.3.1.patched20201106

- Dockerfile
Published by alexsigaras over 5 years ago

bioinformatics - v1.3.0 - STAR aligner

Added the latest STAR aligner tool to the image: https://github.com/alexdobin/STAR

What's Changed

• adding the MIT license by @asboner in https://github.com/eipm/bioinformatics/pull/7
• Adding the test data into the docker image by @asboner in https://github.com/eipm/bioinformatics/pull/9
• Using GitHub Actions by @asboner in https://github.com/eipm/bioinformatics/pull/5
• Added latest version of STAR by @asboner in https://github.com/eipm/bioinformatics/pull/11

Full Changelog: https://github.com/eipm/bioinformatics/compare/1.2.0...1.3.0

- Dockerfile
Published by asboner over 5 years ago

bioinformatics - v1.2.0 - transformBAM release

This release include the transformBAM.sh tools that allows to convert IDs in BAM files

What's Changed

• Updated libraries and README by @asboner in https://github.com/eipm/bioinformatics/pull/2
• splitting by RG; TODO convert and merge by @asboner in https://github.com/eipm/bioinformatics/pull/4

Full Changelog: https://github.com/eipm/bioinformatics/compare/1.1.0...1.2.0

- Dockerfile
Published by asboner almost 6 years ago