Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/cardiacmodelling/voltageclampapi

A python web api for the artefacts app

https://github.com/cardiacmodelling/voltageclampapi

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.3%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A python web api for the artefacts app

Basic Info
  • Host: GitHub
  • Owner: CardiacModelling
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: main
  • Size: 1.17 MB
Statistics
  • Stars: 0
  • Watchers: 4
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created about 4 years ago · Last pushed over 3 years ago
Metadata Files
Readme License

README.md

A python web api for the voltage clamp artefacts app

This repository contains

  • app A Python app that uses flask to present a web API for running simulations.
  • docker A bunch of files to let you run the app in a web server in in a Docker container.
  • html A very primitive HTML client used to test the API during development.

If you want to deploy the app, look at docker/README.md.

If you want to modify the app, or just play around with it locally, look at app/README.md.

If you want to build a client, look at the API docs (link below) or the examples in html and client.py.

The API itself is documented in API.md.

This app uses the model from CardiacModelling/VoltageClampModel [1].

[1] Lei, C.L., Clerx, M., Whittaker, D.G., Gavaghan D.J., de Boer, T.P. and Mirams, G.R. (2020). Accounting for variability in ion current recordings using a mathematical model of artefacts in voltage-clamp experiments. Philosophical Transactions of the Royal Society A, 378: 20190348.

Owner

  • Name: Cardiac Modelling
  • Login: CardiacModelling
  • Kind: organization
  • Location: United Kingdom

Codes and Resources from the University of Nottingham's cardiac modelling team

GitHub Events

Total
Last Year

Dependencies

Dockerfile docker
  • python 3.10-slim build
app/requirements.txt pypi
  • Flask-Caching *
  • flask-cors *
  • flask-limiter *
  • flask-restful *
  • myokit >=1.33.6