https://github.com/carmonalab/tcranker.demo
A repository for demonstrating the functionality of TCRanker
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
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○Scientific vocabulary similarity
Low similarity (5.0%) to scientific vocabulary
Repository
A repository for demonstrating the functionality of TCRanker
Basic Info
- Host: GitHub
- Owner: carmonalab
- Language: CSS
- Default Branch: master
- Size: 2.69 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Ranking TCRs by gene signatures using TCRanker
In this repo we host code and scripts to run TCRanker in different settings.
Quick start with TCRanker to rank CD8 T cells from B16 mouse based on exhaustion level: TCRanker demo
Combine scRNA-seq and scTCR-seq in Seurat, prior to running TCRanker: TCRanker data prep
Obtain full-length TCR sequences from TCRanker results using the stitchr tool: TCR reconstruction
Installation instructions and more information at the TCRanker GitHub repo
Owner
- Name: Cancer Systems Immunology Lab
- Login: carmonalab
- Kind: organization
- Location: Lausanne, Switzerland
- Website: https://agora-cancer.ch/laboratory/carmona-lab
- Twitter: carmonation
- Repositories: 16
- Profile: https://github.com/carmonalab
At Ludwig Cancer Research Lausanne and Department of Oncology, University of Lausanne & Swiss Institute of Bioinformatics