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homelette

A unified and modular interface to homology modelling software

https://github.com/philippjunk/homelette

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.8%) to scientific vocabulary

Keywords

biology homology-modeling protein-structure python python-library
Last synced: 4 months ago · JSON representation ·

Repository

A unified and modular interface to homology modelling software

Basic Info
  • Host: GitHub
  • Owner: PhilippJunk
  • License: mit
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 710 KB
Statistics
  • Stars: 11
  • Watchers: 1
  • Forks: 2
  • Open Issues: 0
  • Releases: 5
Topics
biology homology-modeling protein-structure python python-library
Created over 4 years ago · Last pushed about 2 years ago
Metadata Files
Readme Changelog License Citation

README.md

GitHub tag (latest by date) PyPI PyPI - Python Version Read the Docs Docker Image Version (latest semver) GitHub

homelette

A Python package offering a unified interface to different software for generating and evaluating homology models. This enables users to easily assemble custom homology modelling pipelines. homelette is extensively documented, lightweight and easily extendable.

For more information, please check out our online documentation.

Logo

Citing

If you use homelette in your research, please cite the following article: 

Philipp Junk, Christina Kiel, HOMELETTE: a unified interface to homology modelling software, Bioinformatics, 2021;, btab866, https://doi.org/10.1093/bioinformatics/btab866

Installation

The simplest way to use homelette is to access it through our prepared docker container. For more information, please check homelette/docker or the documentation.

homelette can also be installed from PIP.

bash python3 -m pip install homelette

Instructions on how to install homology modelling and evaluation dependencies can be found in our documentation.

Examples

There is a series of eight tutorials available demonstrating the use and extension of our homology modelling interface. Tutorials are available on our documentation webpage or as interactive Jupyter Notebooks in our Docker image or in homelette/examples.

License

homelette is freely available under the MIT license.

Owner

  • Name: Philipp Junk
  • Login: PhilippJunk
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
title: "HOMELETTE: a unified interface to homology modelling software"
authors:
  - family-names: "Junk"
    given-names: "Philipp"
    orcid: "https://orcid.org/0000-0002-5228-3896"
  - family-names: "Kiel"
    given-names: "Christina"
contact:
  - email: philippjunk@ucdconnect.ie
    family-names: Junk
    given-names: Philipp
license: MIT
repository-code: "https://github.com/PhilippJunk/homelette"
type: software
version: 1.4
message: "Please cite this software using the metadata from preferred-citation."
preferred-citation:
  type: article
  title: "HOMELETTE: a unified interface to homology modelling software"
  journal: "Bioinformatics"
  year: "2021"
  date-published: "2021-12-25"
  authors:
    - family-names: "Junk"
      given-names: "Philipp"
      orcid: "https://orcid.org/0000-0002-5228-3896"
    - family-names: "Kiel"
      given-names: "Christina"
  url: "https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btab866/6483082"
  doi: 10.1093/bioinformatics/btab866

GitHub Events

Total
  • Watch event: 2
Last Year
  • Watch event: 2

Committers

Last synced: almost 2 years ago

All Time
  • Total Commits: 144
  • Total Committers: 1
  • Avg Commits per committer: 144.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 28
  • Committers: 1
  • Avg Commits per committer: 28.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Philipp Junk p****k@u****e 144
Committer Domains (Top 20 + Academic)
ucdconnect.ie: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 5
  • Total pull requests: 0
  • Average time to close issues: 23 days
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 4.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • wt12318 (5)
Pull Request Authors
Top Labels
Issue Labels
bug (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 22 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 4
  • Total maintainers: 1
pypi.org: homelette

A unified and modular interface to homology modelling software

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 22 Last month
Rankings
Dependent packages count: 10.1%
Forks count: 19.1%
Stargazers count: 19.4%
Average: 21.4%
Dependent repos count: 21.5%
Downloads: 37.0%
Maintainers (1)
philippjunk
Last synced: 4 months ago

Dependencies

docs/requirements.txt pypi
  • ipykernel *
  • nbsphinx *
setup.py pypi