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https://github.com/caseyyoungflesh/pheno_sensitivity

Code for Youngflesh et al. 2021 Nature Ecology and Evolution

https://github.com/caseyyoungflesh/pheno_sensitivity

Science Score: 10.0%

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    Links to: nature.com, zenodo.org
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Repository

Code for Youngflesh et al. 2021 Nature Ecology and Evolution

Basic Info
  • Host: GitHub
  • Owner: caseyyoungflesh
  • License: mit
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 45.9 KB
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  • Stars: 1
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created almost 6 years ago · Last pushed almost 3 years ago

https://github.com/caseyyoungflesh/Pheno_sensitivity/blob/master/ 

# Pheno_sensitivity


[![Zenodo DOI](https://zenodo.org/badge/290607887.svg)](https://zenodo.org/badge/latestdoi/290607887)


Code for Youngflesh et al. 2021 *Nature Ecology and Evolution*


This repository contains code to model bird arrival as a function of green-up and green-up as a function of time. The companion repository, which contains code to quantify bird arrival can be found [here](https://github.com/phenomismatch/Bird_Phenology).


**Associated publications:**

Youngflesh, C., Socolar, J., Amaral, B.R., Arab, A., Guralnick, R.P., Hurlbert, A.H., LaFrance, R., Mayor, S.J., Miller, D.A.W., Tingley, M.W. 2021. [Migratory strategy drives species-level variation in bird sensitivity to vegetation green-up.](https://www.nature.com/articles/s41559-021-01442-y) __*Nature Ecology and Evolution*__ 5:987994.



**Repository structure:**

* `Data/` (ignored) - Data relevant for project
  * `arrival_master_` - output from `5-extract-arr-dates.R` in companion repo
  * `environent`
    * `RAW` - raw green-up data
      * `MCD12Q1` - MCD12Q1 product data
      * `MCD12Q2` - MCD12Q2 product data
    * `processed` - processed green-up date
  * `hex_grid_crop` - study area
  
* `Scripts/` - scripts to run analyses
  * `1-process-gr/`
    * `1a-landcover.R` - create land cover mask
    * `1b-greenup.R` - extract green-up data over study area
  * `2-gr-SVC.R` - script to run green-up as a function of time
  * `3-arr-gr-SVC-sens.R` - script to run bird arrival as a function of green-up

* `Results/` (ignored)

Owner

  • Name: Casey Youngflesh
  • Login: caseyyoungflesh
  • Kind: user
  • Company: Michigan State University

Quantitative Ecology | Global Change | Population Biology | Biodiversity

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