Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.10.0

Microbiome v0.10.0

Diff since v0.9.4

Merged pull requests: - Remove deprecation and bump version (#140) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.9.4

Microbiome v0.9.4

Diff since v0.9.3

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.9.3

Microbiome v0.9.3

Diff since v0.9.2

Closed issues: - JuliaCon presentation (#130)

Merged pull requests: - Allow MultivariateStats v0.10 (#138) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.9.2

Microbiome v0.9.2

Diff since v0.9.1

Merged pull requests: - Juliacon tutorial outline (#132) (@anikaluo) - Juliacon Tutorial (#133) (@kescobo) - Improve speed of shannon and ginisimpson (#135) (@barucden)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 3 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.9.1

Microbiome v0.9.1

Diff since v0.9.0

Closed issues: - mantel test (#127)

Merged pull requests: - remove duplicate method (#129) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.9.0

Microbiome v0.9.0

Diff since v0.8.4

Merged pull requests: - Remove axis indices and nameddims (#126) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.8.4

Microbiome v0.8.4

Diff since v0.8.3

Closed issues: - Add Metabolite <: AbstractFeature (#122)

Merged pull requests: - add metabolite feature (#124) (@kescobo) - Metabolites (#125) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.8.3

Microbiome v0.8.3

Diff since v0.8.2

Merged pull requests: - add get method for whole community, and default for default (#120) (@kescobo) - Retest (#121) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.8.2

Microbiome v0.8.2

Diff since v0.8.1

Closed issues: - Update NEWS.md (#116)

Merged pull requests: - update news (#118) (@kescobo) - dont use rand in docs (#119) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.8.1

Microbiome v0.8.1

Diff since v0.8.0

Closed issues: - Dictionaries.jl in Microbiome.jl (#107) - SparseArrays (#108) - Dependencies minor issue - Can't run sample types docs s2 example (#111) - vignette for data import (#112) - documentation for Microbiome.hasrank and Microbiome.Taxon (#114)

Merged pull requests: - Add downstream package tests (#103) (@kescobo) - some readme typos (#104) (@kescobo) - add missing dois (#105) (@kescobo) - change group for BiobakeryUtils downstream tests (#106) (@kescobo) - Various fixes to tutorial (#109) (@kescobo) - Joss review fixes (#115) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.8.0

Microbiome v0.8.0

Diff since v0.7.2

Closed issues: - Ensure round-tripping with DataFrames (#62) - Bulk addition of metadata (#63) - Bulk extraction of metadata (#64) - Add set! method for adding metadata to community profile (#65) - Add taxfilter/taxfilter! functions for community profiles (#67) - Add function to partition gene function profile into stratified / unstratified (#68) - Broken link to biojulia contribution guidelines (#69) - Change add_metadata! for single samples to set! and insert! (#75) - Add docs for Dictionaries methods (#76) - master vs. main (#90) - taxon ref link (#91) - broken ref link (#92) - grammar typo (#93) - Documenter broken - version incompatibility (#95)

Merged pull requests: - add custom printing for abundance tables (#70) (@kescobo) - add constructor with dense matrix (#71) (@kescobo) - Method for bulk addition of metadata to a Community Profile (#72) (@kescobo) - change contributing link (#73) (@anikaluo) - Add dictionary methods to CommunityProfiles (#74) (@kescobo) - Add cladefilter (#77) (@kescobo) - Add generic filter for CommunityProfiles (#79) (@kescobo) - Adding docstrings to CP methods (#82) (@annelle-abatoni) - Manuscript (#83) (@kescobo) - GeneFunction equality (#85) (@kescobo) - add species string for gene families table output (#86) (@kescobo) - Indexing (#87) (@kescobo) - Docs and tutorials (#88) (@kescobo) - Microbiome typos/edits (#89) (@anikaluo) - Issue jubilee (#94) (@kescobo) - use docs deploy action (#96) (@kescobo) - Feature strings (#97) (@kescobo) - fix branch in gha-docs (#98) (@kescobo) - Manuscript (#100) (@annelle-abatoni) - Figures (#101) (@kescobo) - EcoJulia transfer (#102) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.7.2

Microbiome v0.7.2

Diff since v0.7.1

Closed issues: - Add prevalence and abundance filters to AbundanceTable (#32)

Merged pull requests: - Add function to join community profiles (#58) (@kescobo) - change ci to julia 1 (#59) (@kescobo) - Add prevalence_filter (#61) (@kescobo) - Metadata for CommunityProfiles (#66) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 4 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.7.1

Microbiome v0.7.1

Diff since v0.7.0

Merged pull requests: - Distance metrics (#57) (@pknight24)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 5 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.7.0

Microbiome v0.7.0

Diff since v0.6.5

Merged pull requests: - Tables interface (#54) (@kescobo) - v0.7.0 release, version, news, etc (#56) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 5 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.6.5

Microbiome v0.6.5

Diff since v0.6.3

Merged pull requests: - CompatHelper: bump compat for "StatsBase" to "0.33" (#45) (@github-actions[bot]) - CompatHelper: bump compat for "DataFrames" to "0.21" (#46) (@github-actions[bot]) - Fix Docs Build (#47) (@kescobo) - Updates (#48) (@kescobo) - update compat (#51) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 5 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.6.3

Microbiome v0.6.3

Diff since v0.6.2

Merged pull requests: - Update SpatialEcology dependency (#44) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 6 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.6.2

Microbiome v0.6.2

Diff since v0.6.1

Merged pull requests: - CompatHelper: bump compat for "SpatialEcology" to "0.8" (#41) (@github-actions[bot]) - CompatHelper: bump compat for "SpatialEcology" to "0.9" (#42) (@github-actions[bot]) - Bump version for compat (#43) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 6 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.6.1

Microbiome v0.6.1

Diff since v0.6.0

Closed issues: - Register v0.6 (#39)

Merged pull requests: - v0.6 (#38) (@kescobo) - No Manifest file (#40) (@BenJWard)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 6 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data - v0.6.0

Microbiome v0.6.0

Diff since v0.5.1

Closed issues: - Register 0.5.1 (#35)

Merged pull requests: - Several fixes (#37) (@kescobo)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 6 years ago