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Recent Releases of cffr

cffr - cffr 1.2.0

  • New parameter r_citation in cff_write(). When it is set to TRUE a R citation file (inst/CITATION) would be generated/updated with the information of the generated CITATION.cff file. No backup copy would be created, for more control use cff_write_citation() (#79).
  • repository-code now also recognizes Codeberg as a valid repository (#88).
  • repository-code recognizes repositories regardless of casing. It is still advised to use lower caps as a good practice for R developers.

What's Changed

  • Bump dieghernan/cran-status-check from 1 to 2 by @dependabot in https://github.com/ropensci/cffr/pull/85
  • Add option for auto creation of inst/CITATION by @dieghernan in https://github.com/ropensci/cffr/pull/84

Full Changelog: https://github.com/ropensci/cffr/compare/v1.1.1...v1.2.0

Scientific Software - Peer-reviewed - R
Published by dieghernan over 1 year ago

cffr - cffr 1.1.1

  • Adapt extraction of orcid to R > 4.4.1.

What's Changed

  • Adapt to changes in person (R 4.5.0) by @dieghernan in https://github.com/ropensci/cffr/pull/80

Full Changelog: https://github.com/ropensci/cffr/compare/v1.1.0...v1.1.1

Scientific Software - Peer-reviewed - R
Published by dieghernan almost 2 years ago

cffr - cffr 1.1.0

  • Now cffr adds automatically dois to packages on CRAN (e.g. https://doi.org/10.32614/CRAN.package.cffr):
    • If the package has a CITATION file providing a doi, the CITATION doi would be used as the main CITATION.cff doi and the CRAN doi would be added as an identifier.
    • Otherwise, CRAN doi would be used as doi.
    • When extracting dependencies (e.g cff_create(dependencies = TRUE) and the package dependency is on CRAN, the CRAN doi would be used for the dependency in the references key.
  • Extract commit from RemoteSha.
  • Update cran_to_spdx dataset.

What's Changed

  • Extract commit info by @dieghernan in https://github.com/ropensci/cffr/pull/72
  • Fix action for testing cffr in ~2500 packages by @dieghernan in https://github.com/ropensci/cffr/pull/73
  • Recognize CRAN DOI by @dieghernan in https://github.com/ropensci/cffr/pull/75

Full Changelog: https://github.com/ropensci/cffr/compare/v1.0.1...v1.1.0

Scientific Software - Peer-reviewed - R
Published by dieghernan almost 2 years ago

cffr - cffr 1.0.1

  • Update cff_write() to add a new encoding argument to make it work with different encodings, see iconv().
  • Fix NOTEs due to empty lines in docs.

Full Changelog: https://github.com/ropensci/cffr/compare/v1.0.1...v1.0.1

Scientific Software - Peer-reviewed - R
Published by dieghernan over 2 years ago

cffr - cffr 1.0.0

This is a major release with some notable changes. The change mainly affects to non-core functions, hence the natural workflow (cff_create() → cff_write() → cff_validate()) shouldn't be affected.

Major changes

Classes and methods

Now cffr implements a new class system for definitions.reference, definitions.person and definitions.entity objects:

  • List of definitions.reference (e.g, references) has class cff_ref_lst, cff and individual elements (e.g preferred-citation or each member of references) has class cff_ref, cff.
  • List of definitions.person or definitions.entity (e.g. authors, contact) has class cff_pers_lst, cff and individual elements (e.g publisher or each member of authors) has class cff_pers, cff.

This change allow to write specific S3 Methods and extend the capabilities of the package.

  • New as_cff() S3 generic method (replacing as.cff()): This method coerces R objects to cff class format. Current methods provided are:
    • as_cff.Bibtex().
    • as_cff.bibentry(), replacing cffparsecitation().
    • as_cff.person(), similar to as_cff_person() but only for person objects. We recommend using as_cff_person() since it can coerce also string representing authors in BibTeX markup ("{von Neumen}, James"), that can't be captured properly via methods.
  • New as_bibentry() method for a variety of classes (character, list, NULL and classes defined by cffr).
  • New as_cff_person() method.
  • The following base and utils methods supports now cff class:
    • as.data.frame.cff().
    • as.person(), although only for definitions.person or definitions.entity (e.g. authors, contacts, editors, publisher, etc.).
    • head.cff(), tail.cff().
    • toBibtex.cff().

API

The API has been completely reviewed to provide more clarity on functions naming and to facilitate internal maintenance. This change only affects to non-core functions. Now each function does less things but does it better. The old API has been deprecated and it would warn when used, providing advice on the replacement function.

Deprecation

  • cff_to_bibtex() and cff_extract_to_bibtex(): replaced by as_bibentry() S3 generic.
  • cff_parse_person() and cff_parse_person_bibtex(): replaced by as_cff_person() S3 generic.
  • cff_parse_citation(): replaced by as_cff() S3 generic.
  • cff_from_bibtex(): replaced by cff_read_bib() (for *.bib files) and cff_read_bib_text() (for character strings).
  • write_bib() and write_citation() : replaced by cff_write_bib() and cff_write_citation() respectively.
  • Argument path in cff() is also deprecated, use cff_read() instead.

New capabilities

  • Now reading from external files is performed exclusively by cff_read() (that is designed to fit all supported file types on a single entry point) and the new specific readers (that are used under the hood by cff_read()), namely:
    • cff_read_cff_citation(),
    • cff_read_description(),
    • cff_read_citation()
    • cff_read_bib().
  • New cff_modify() function for updating and modifying cff objects easily.

Other changes

  • Minimum R version required now is 4.0.0.
  • Update of BibTeX crosswalk (see vignette("bibtex_cff", package = "cffr")) and consequently changes in the mapping performed by as_bibtex() cff_parse_citation():
    • \@inbook and \@book gains a new value on [CFF]{.underline} when series is provided: [collection-type: book-series.]{.underline}
    • Can handle BibLaTeX \@inbook, that differs significantly from BibTeX \@inbook.

What's Changed

  • Update lint.yaml by @dieghernan in https://github.com/ropensci/cffr/pull/57
  • Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/ropensci/cffr/pull/59
  • Bump github/codeql-action from 2 to 3 by @dependabot in https://github.com/ropensci/cffr/pull/60
  • Bump actions/upload-artifact from 3 to 4 by @dependabot in https://github.com/ropensci/cffr/pull/61
  • Overhaul of cff-bibtex conversion system by @dieghernan in https://github.com/ropensci/cffr/pull/63
  • New API by @dieghernan in https://github.com/ropensci/cffr/pull/65
  • Refactor internal code by @dieghernan in https://github.com/ropensci/cffr/pull/67
  • Doc review by @dieghernan in https://github.com/ropensci/cffr/pull/68

New Contributors

  • @dependabot made their first contribution in https://github.com/ropensci/cffr/pull/59

Full Changelog: https://github.com/ropensci/cffr/compare/v0.5.0...v1.0.0

Scientific Software - Peer-reviewed - R
Published by dieghernan over 2 years ago

cffr - cffr 0.5.0

Lifecycle

  • Function cff_to_bibtex() and cff_extract_to_bibtex() have been merged, the latter (cff_extract_to_bibtex()) is now soft-deprecated.

New features

  • New function write_citation() that can generate a inst/CITATION file from a cff object (#51).

Enhancements

  • Additional authors of a R package can be now included based on the role on the DESCRIPTION file, via the parameter authors_roles (#49).

  • New message interface based on cli capabilities.

  • Now the (invisible) result of cff_validate() includes the summary of errors (if any) as an attributes() named "error", as jsonvalidate::json_validate() does when verbose = TRUE:

    Be verbose? If TRUE, then an attribute "errors" will list validation failures as a data.frame

  • Improvements in the extraction of `date-release`.

What's Changed

  • Allow to add more authors by role by @dieghernan in https://github.com/ropensci/cffr/pull/50
  • Improve testing by @dieghernan in https://github.com/ropensci/cffr/pull/52
  • Improve documentation by @dieghernan in https://github.com/ropensci/cffr/pull/53
  • Improve tests and messages by @dieghernan in https://github.com/ropensci/cffr/pull/54
  • Add write_citation function by @dieghernan in https://github.com/ropensci/cffr/pull/55

Full Changelog: https://github.com/ropensci/cffr/compare/v0.4.1...v0.5.0

Scientific Software - Peer-reviewed - R
Published by dieghernan about 3 years ago

cffr - cffr 0.4.1

  • Replace crayon dependency for cli (#46).
  • Improvements on the performance of cff_validate().

What's Changed

  • Update badge by @dieghernan in https://github.com/ropensci/cffr/pull/45
  • Migrate to cli from crayon by @dieghernan in https://github.com/ropensci/cffr/pull/47

Full Changelog: https://github.com/ropensci/cffr/compare/v0.4.0...v0.4.1

Scientific Software - Peer-reviewed - R
Published by dieghernan over 3 years ago

cffr - cffr 0.4.0

  • Fix typo (#40) by @dpprdan
  • Add new function cff_from_bibtex().
  • Consistent behavior on dependency urls when RSPM is the default repo (i.e. on GitHub Actions or RStudio Cloud).

What's Changed

  • typo by @dpprdan in https://github.com/ropensci/cffr/pull/40
  • Add cfffrombibtex() by @dieghernan in https://github.com/ropensci/cffr/pull/41

New Contributors

  • @dpprdan made their first contribution in https://github.com/ropensci/cffr/pull/40

Full Changelog: https://github.com/ropensci/cffr/compare/v0.3.0...v0.4.0

Scientific Software - Peer-reviewed - R
Published by dieghernan over 3 years ago

cffr - cffr 0.3.0

  • preferred-citation is only produced when a CITATION (R) file has been provided with the package (#37).
  • Improve email handling on authors.
  • Add cff_read() function. This functionality was already implemented on cff() but new function added in order to provide clarity.

What's Changed

  • Improve preferred-citation handling by @dieghernan in https://github.com/ropensci/cffr/pull/38

Full Changelog: https://github.com/ropensci/cffr/compare/v0.2.3...v0.3.0

Scientific Software - Peer-reviewed - R
Published by dieghernan almost 4 years ago

cffr - cffr 0.2.3

  • Update docs to HTML5

Full Changelog: https://github.com/ropensci/cffr/compare/v0.2.2...v0.2.3

Scientific Software - Peer-reviewed - R
Published by dieghernan almost 4 years ago

cffr - cffr 0.2.2

  • cffr now uses a local copy of the schema.json for validating. (#33).

What's Changed

  • Validate against a local copy by @dieghernan in https://github.com/ropensci/cffr/pull/34

Full Changelog: https://github.com/ropensci/cffr/compare/v0.2.1...v0.2.2

Scientific Software - Peer-reviewed - R
Published by dieghernan over 4 years ago

cffr - cffr 0.2.1

  • GitHub Action now runs only on master or mainbranch.

  • Better handling of references

Full Changelog: https://github.com/ropensci/cffr/compare/v0.2.0...v0.2.1

Scientific Software - Peer-reviewed - R
Published by dieghernan over 4 years ago

cffr - cffr 0.2.0

  • Now cffr extracts also information of the package dependencies and adds the main citation of the dependencies to the references field, using citation(auto = TRUE).

    • New dependencies parameter on cff_create() and cff_write().

  • Other improvements on cff_parse_citation():

    • cff_parse_citation() extracts more information of authors, based on the fields provided on the DESCRIPTION file.
    • cff_parse_citation() does a better job extracting information from bibentry() /BibTeX and mapping it to preferred-citation/references fields of CFF.

  • Add new functions for working with git pre-commit hooks Experimental:

    • cff_git_hook_install()
    • cff_git_hook_remove()

  • New BibTeX functions:

    • cff_extract_to_bibtex()
    • cff_to_bibtex()
    • cff_parse_person_bibtex()
    • write_bib()

  • Add a new dependency: lifecycle.

What's Changed

  • Rebase hook by @dieghernan in https://github.com/ropensci/cffr/pull/23
  • Add a git hook by @dieghernan in https://github.com/ropensci/cffr/pull/24
  • Add capacities for creating bibtex files by @dieghernan in https://github.com/ropensci/cffr/pull/26
  • Improve bibtex conversion by @dieghernan in https://github.com/ropensci/cffr/pull/27
  • New vignette by @dieghernan in https://github.com/ropensci/cffr/pull/28

Full Changelog: https://github.com/ropensci/cffr/compare/v0.1.1...v0.2.0

Scientific Software - Peer-reviewed - R
Published by dieghernan over 4 years ago

cffr - cffr 0.1.1

  • Accepted on JOSS DOI
  • Include pages on cff_parse_citation() .
  • New gh_keywords parameter on cff_create() /cff_write(). If TRUE, it would include GitHub repo topics as keywords.

What's Changed

  • Add support for pages by @dieghernan in https://github.com/ropensci/cffr/pull/16
  • Add JOSS by @dieghernan in https://github.com/ropensci/cffr/pull/17
  • Add remote keyword for GH repos by @dieghernan in https://github.com/ropensci/cffr/pull/18
  • Add vignette paper by @dieghernan in https://github.com/ropensci/cffr/pull/19
  • Add JOSS paper vignette by @dieghernan in https://github.com/ropensci/cffr/pull/20

Full Changelog: https://github.com/ropensci/cffr/compare/v0.1.0...v0.1.1

Scientific Software - Peer-reviewed - R
Published by dieghernan over 4 years ago

cffr - cffr 0.1.0

  • First CRAN release

What's Changed

  • Update DOI and docs by @dieghernan in https://github.com/ropensci/cffr/pull/15

Full Changelog: https://github.com/ropensci/cffr/compare/v0.0.2...v0.1.0

Scientific Software - Peer-reviewed - R
Published by dieghernan over 4 years ago

cffr - cffr 0.0.2

  • cffr is part now of rOpenSci.
  • Update on docs and README.
  • Add fuzzy match on keys parameter.
  • New dataset: cran_to_spdx.
  • Add DOI https://doi.org/10.5281/zenodo.5509766
  • Citation of installed packages extracted using citation().
  • Auto-generating preferred-citation key from DESCRIPTION.
  • Rename cff_schema_definitions_reference() to cff_schema_definitions_refs().
  • "repository" key is supported.
  • Added vignette: vignette("crosswalk", package = "cffr").
  • Add support to Bioconductor packages.
  • New function: cff_gha_update().

What's Changed

  • [ImgBot] Optimize images by @imgbot in https://github.com/ropensci/cffr/pull/6
  • Improve logo by @dieghernan in https://github.com/ropensci/cffr/pull/9
  • [ImgBot] Optimize images by @imgbot in https://github.com/ropensci/cffr/pull/11
  • ropensci review: address feedback by @dieghernan in https://github.com/ropensci/cffr/pull/10
  • Address feedback from @sckott by @dieghernan in https://github.com/ropensci/cffr/pull/12
  • Update links and gh actions by @dieghernan in https://github.com/ropensci/cffr/pull/13

New Contributors

  • @dieghernan made their first contribution in https://github.com/ropensci/cffr/pull/9

Full Changelog: https://github.com/ropensci/cffr/compare/v0.0.1...v0.0.2

Scientific Software - Peer-reviewed - R
Published by dieghernan over 4 years ago

cffr - cffr 0.0.1

  • First stable release

Scientific Software - Peer-reviewed - R
Published by dieghernan almost 5 years ago